G1179214


Basic Information

Item Value
gene id G1179214
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45453959 ~ 45455862 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1344825
aggacttgcacaattggtggctgactaaatacttttctgccccactgtacatgacgATCTATTACATTAAATGAAGATCATTGAGTAACTTTTCCTATAGAGTGCTGTAATGCATTTTAATTGTCAGCCATAGGGTACATGCCAATTCAGATATATGCACATTCTGTGTATGTTCTAGTCAGTGCATATTTCCCAGCAACCATGGATGGAAACCTATGATGTGTGTTTTATGTTACATGTGTTTGAGCTTACATCAACTGTATATGAACATATGTAGTAGTAATACGGATAATACCAACACAATGGCATACAGTGCTTCTGTAAAGGGAAAAACACTATTCGAGTAAATGTATTTATCTATTAGATTTCTGAGTTACTTAATTACTTAGGCCCATCGCCCCATGAGAAGCATAGGCCATCAACTGGCCATCAACTGAGTTGACTTCATGTATCTGAAATTATCTAGAATTTAAACCCAATGAAATTATACAATCATTTACTATTCTCCTAAACTATAATGTTAATGTGTAGGACATATACTGTATGATTGTGTTAGCAGACATACAGTAGTAGCTATGCAATATACTGGATGCCCCATATGGTGTCCCCATATGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACACTACACCGTCAACCATCATGACAAATTGGTTGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACTCTACACCGTCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACTCTACACCGTCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACACTACACCGTCAACATTGTCTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACATTGTCTGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACATTGTCTGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACATTGTCTGATGACACGACACCATCAAAATTGTCTGATGACACTAGCTCAAATGTTTTGCCTTTATTTTTTATTCGCTTGTTCTCATCAATTTGGTTTCTGCAACCTTATTTAACTTTGTTTACCAAAATGAGCACTTGTTTTGGAAATGACCCTAAATGAAGGATGCTTTCCTTGGGAAGGCATGGGTTGACTATATTTTATATGCAACTTTTGTAAAAGTCTACATTTTATACctgatttgtaattatgtaaaTGAAGGCTCCAGATGATCAAATCAGATAATGTATGCTTCTGATTAGAGAGCAACGTCAGGATAAAGCACAAGTGGACTTAACATATATATTGTACCTGCCTCTAATATCTGCTTATTACCATACtggaatttatttgaattgcaaaTTAAACACAGCTTT
>TU1344826
aggacttgcacaattggtggctgactaaatacttttctgccccactgtacatgacgATCTATTACATTAAATGAAGATCATTGAGTAACTTTTCCTATAGAGTGCTGTAATGCATTTTAATTGTCAGCCATAGGGTACATGCCAATTCAGATATATGCACATTCTGTGTATGTTCTAGTCAGTGCATATTTCCCAGCAACCATGGATGGAAACCTATGATGTGTGTTTTATGTTACATGTGTTTGAGCTTACATCAACTGTATATGAACATATGTAGTAGTAATACGGATAATACCAACACAATGGCATACAGTGCTTCTGTAAAGGGAAAAACACTATTCGAGTAAATGTATTTATCTATTAGATTTCTGAGTTACTTAATTACTTAGGCCCATCGCCCCATGAGAAGCATAGGCCATCAACTGGCCATCAACTGAGTTGACTTCATGTATCTGAAATTATCTAGAATTTAAACCCAATGAAATTATACAATCATTTACTATTCTCCTAAACTATAATGTTAATGTGTAGGACATATACTGTATGATTGTGTTAGCAGACATACAGTAGTAGCTATGCAATATACTGGATGCCCCATATGGTGTCCCCATATGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACACTACACCGTCAACCATCATGACAAATTGGTTGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACTCTACACCGTCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACTCTACACCGTCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACACTACACCGTCAACATTGTCTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACATTGTCTGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACATTGTCTGATGACACGACACCATCAAAATTGTCTGATGACACTAGCTCAAATGTTTTGCCTTTATTTTTTATTCGCTTGTTCTCATCAATTTGGTTTCTGCAACCTTATTTAACTTTGTTTACCAAAATGAGCACTTGTTTTGGAAATGACCCTAAATGAAGGATGCTTTCCTTGGGAAGGCATGGGTTGACTATATTTTATATGCAACTTTTGTAAAAGTCTACATTTTATACctgatttgtaattatgtaaaTGAAGGCTCCAGATGATCAAATCAGATAATGTATGCTTCTGATTAGAGAGCAACGTCAGGATAAAGCACAAGTGGACTTAACATATATATTGTACCTGCCTCTAATATCTGCTTATTACCATACtggaatttatttgaattgcaaaTTAAACACAGCTTT
>TU1344827
aggacttgcacaattggtggctgactaaatacttttctgccccactgtacatgacgATCTATTACATTAAATGAAGATCATTGAGTAACTTTTCCTATAGAGTGCTGTAATGCATTTTAATTGTCAGCCATAGGGTACATGCCAATTCAGATATATGCACATTCTGTGTATGTTCTAGTCAGTGCATATTTCCCAGCAACCATGGATGGAAACCTATGATGTGTGTTTTATGTTACATGTGTTTGAGCTTACATCAACTGTATATGAACATATGTAGTAGTAATACGGATAATACCAACACAATGGCATACAGTGCTTCTGTAAAGGGAAAAACACTATTCGAGTAAATGTATTTATCTATTAGATTTCTGAGTTACTTAATTACTTAGGCCCATCGCCCCATGAGAAGCATAGGCCATCAACTGGCCATCAACTGAGTTGACTTCATGTATCTGAAATTATCTAGAATTTAAACCCAATGAAATTATACAATCATTTACTATTCTCCTAAACTATAATGTTAATGTGTAGGACATATACTGTATGATTGTGTTAGCAGACATACAGTAGTAGCTATGCAATATACTGGATGCCCCATATGGTGTCCCCATATGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACACTACACCGTCAACCATCATGACAAATTGGTTGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACTCTACACCGTCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACTCTACACCGTCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACACTACACCGTCAACATTGTCTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACATTGTCTGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACATTGTCTGATGACACGACACCATCAAAATTGTCTGATGACACTAGCTCAAATGTTTTGCCTTTATTTTTTATTCGCTTGTTCTCATCAATTTGGTTTCTGCAACCTTATTTAACTTTGTTTACCAAAATGAGCACTTGTTTTGGAAATGACCCTAAATGAAGGATGCTTTCCTTGGGAAGGCATGGGTTGACTATATTTTATATGCAACTTTTGTAAAAGTCTACATTTTATACctgatttgtaattatgtaaaTGAAGGCTCCAGATGATCAAATCAGATAATGTATGCTTCTGATTAGAGAGCAACGTCAGGATAAAGCACAAGTGGACTTAACATATATATTGTACCTGCCTCTAATATCTGCTTATTACCATACtggaatttatttgaattgcaaaTTAAACACAGCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1344825 False 1850 lncRNA 0.38 2 45453959 45455862
TU1344826 False 1747 lncRNA 0.38 2 45453959 45455862
TU1344827 True 1671 lncRNA 0.37 2 45453959 45455862

Neighbor

gene id symbol gene type direction distance location
usp43b LOC106601383 coding upstream 2217 45358739 ~ 45451742 (+)
LOC110486541 LOC106607062 coding upstream 185539 45223469 ~ 45268420 (+)
hmox1a LOC106607056 coding upstream 299227 45152082 ~ 45154732 (+)
LOC110486534 NA coding upstream 313019 45135680 ~ 45140940 (+)
zgc:162612 LOC106607050 coding upstream 338812 45111643 ~ 45115147 (+)
LOC110486545 grb2 coding downstream 28936 45484798 ~ 45524322 (+)
trnas-aga-61 NA coding downstream 70943 45526805 ~ 45526886 (+)
LOC110485192 LOC106601391 coding downstream 73536 45529398 ~ 45554103 (+)
LOC110486547 LOC106607066 coding downstream 99956 45555818 ~ 45559601 (+)
LOC110486546 LOC106601396 coding downstream 104072 45559934 ~ 45614619 (+)
G1179259 NA non-coding upstream 27568 45418000 ~ 45426391 (+)
G1179178 NA non-coding upstream 101054 45352458 ~ 45352905 (+)
G1179151 NA non-coding upstream 110882 45300753 ~ 45343077 (+)
G1179130 NA non-coding upstream 178321 45275408 ~ 45275638 (+)
G1179350 NA non-coding downstream 672 45456534 ~ 45456776 (+)
G1179352 NA non-coding downstream 1745 45457607 ~ 45457815 (+)
G1179359 NA non-coding downstream 5640 45461502 ~ 45461701 (+)
G1179360 NA non-coding downstream 6191 45462053 ~ 45462305 (+)
G1179369 NA non-coding downstream 15323 45471185 ~ 45471415 (+)
G1179156 NA other upstream 140926 45312330 ~ 45313033 (+)
LOC110486526 smarca4 other upstream 484240 44967368 ~ 44996127 (+)
LOC110485188 LOC106601310 other upstream 527642 44878675 ~ 44943951 (+)
G1178425 NA other upstream 589776 44859869 ~ 44864183 (+)
G1178363 NA other upstream 785500 44668068 ~ 44668459 (+)
G1179362 NA other downstream 6726 45462588 ~ 45462943 (+)
LOC118936304 LOC106601427 other downstream 718166 46173911 ~ 46176562 (+)
G1180047 NA other downstream 783282 46239144 ~ 46273601 (+)
LOC110485193 LOC106601421 other downstream 875856 46302751 ~ 46336386 (+)

Expression


Co-expression Network