G1179621 (LOC106607015)


Basic Information

Item Value
gene id G1179621
gene name LOC106607015
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45531858 ~ 45532662 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1345282
ATTCTTCGGTTTAGGAACCAGTATTGCCTCCGGTGGCGGTCATAGCCGATGGGCTCCTGGCGGATGTAGGGTTTGCTCTTCTGCATCTCTGTCACACAGTCTGTGACCCCGGGTACCTTGTGTGCCACGCAGATTTCACACTGCCATTCGTCCTCCGGCACCTCTACCAGAGGCGGCTTCACACACTCCAGGTGGTAGACGGCAGAGCAGGTCTCACAGCACAGCAGGTCCCCCAATCTGTGGCACACCCTGCAGTGGTCATCATACTGCACCACCCCCTCTGACATTAACTCCTCACGGGCGATGTTGGTGGTGAGGAACTGATCCACCAAGAACTGCAGCACCTTGATCTTACTGTCCAGAGGGCCGTAGGGGTAGTCCTCCACCTCCTggtagagcaggacatggtggtaCTCCTGGTCGCTCTCGCAGTAGGCACGGACCACCTCGGGCCACGTCATGCCATCAATGAAGTAGAGGGTGGAGTTGACACTGTCCTTGAGGTCAGCAGGACCAAACGTGGTGTTGGAGGTGTCCTCCTCACGCAGGATGGCCTTCAGCAGGGCTGTGTGGGTCTCTGCCATCAGCGTGCACTGCTCCTGGCCTACCAGCGCAGCACAGAAGTCCTCAAAGCGGAAGGGAGAGAGCCGCAGCACCGTGCTGAAGTTGCGCAGGACCTCATAGATGGAGGACACGTTGAGCAGTTCCTCGCTGGGCACCAGGAGGTCCTCAGAGGTTCTGGGCAGCTCCAGAGGAGGGATCTCCTTTTCCTCAAAGATGGGCGAGCGAGGGCAGTGCACCCGCG

Function

NR:

description
nucleosome-remodeling factor subunit BPTF-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1345282 True 805 TUCP 0.59 1 45531858 45532662

Neighbor

gene id symbol gene type direction distance location
trnas-aga-60 NA coding downstream 5188 45526589 ~ 45526670 (-)
mchr1b LOC106601409 coding downstream 47180 45481000 ~ 45484678 (-)
LOC110486542 LOC106608160 coding downstream 198826 45300733 ~ 45333032 (-)
pik3r6b NA coding downstream 318203 45200981 ~ 45213655 (-)
LOC110485191 LOC106601377 coding downstream 335881 45194711 ~ 45195977 (-)
LOC100135782 LOC106607000 coding upstream 119234 45651896 ~ 45654777 (-)
LOC110486550 LOC106601398 coding upstream 122236 45654898 ~ 45677812 (-)
LOC110486551 fbf1 coding upstream 148196 45680858 ~ 45692892 (-)
LOC110486553 NA coding upstream 171345 45704005 ~ 45709228 (-)
LOC110486554 cygb coding upstream 177487 45710149 ~ 45716653 (-)
G1179318 NA non-coding downstream 76004 45453959 ~ 45455854 (-)
G1179346 NA non-coding downstream 86419 45444241 ~ 45445439 (-)
G1179344 NA non-coding downstream 88282 45443237 ~ 45443576 (-)
G1179209 NA non-coding downstream 178956 45352570 ~ 45352902 (-)
G1179208 NA non-coding downstream 186432 45345215 ~ 45345426 (-)
G1179625 NA non-coding upstream 5606 45538268 ~ 45538793 (-)
G1179630 NA non-coding upstream 15161 45547823 ~ 45548058 (-)
G1179629 NA non-coding upstream 15863 45548525 ~ 45549374 (-)
G1179658 LOC105891918 non-coding upstream 74732 45607394 ~ 45627018 (-)
G1179685 NA non-coding upstream 107228 45639890 ~ 45640411 (-)
G1179619 LOC106601391 other downstream 1744 45529436 ~ 45530114 (-)
zgc:171844 LOC106607059 other downstream 338553 45182660 ~ 45193315 (-)
il-8 il-8 other downstream 444728 45085269 ~ 45087130 (-)
G1178996 NA other downstream 479834 45051576 ~ 45052024 (-)
G1178982 LOC106607046 other downstream 503245 45026515 ~ 45028613 (-)
LOC110486586 ubald2 other upstream 980795 46510585 ~ 46535713 (-)
LOC110486590 LOC105022923 other upstream 1350766 46827752 ~ 46915018 (-)
LOC110486593 LOC106606954 other upstream 1900134 47432406 ~ 47433949 (-)
LOC110486594 LOC106601485 other upstream 1929619 47460436 ~ 47466735 (-)
LOC110486618 LOC106606909 other upstream 2470369 47999581 ~ 48015951 (-)

Expression


Co-expression Network