G1179402


Basic Information

Item Value
gene id G1179402
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45532718 ~ 45532950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1345041
ATATTATGCACCATCTCCATACCATACTGAGTGATCTCACCTGAGTGATACATTGTATTTTGTGATGTAATCAGAGAGTGGATGTATGTCCTTGAGGTTCTTAAAAACAAGTTAATCGATTGCCTTCAGAATTACTTAGTTGTTTTTTCCAGTGCTGAATTGCTTGGTATAACATCAGTCATGTCTTGTGGATAGAATAATACACATTTTGTTGCTGAACACTATGTACACAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1345041 True 233 lncRNA 0.36 1 45532718 45532950

Neighbor

gene id symbol gene type direction distance location
trnas-aga-61 NA coding upstream 5832 45526805 ~ 45526886 (+)
LOC110486545 grb2 coding upstream 8396 45484798 ~ 45524322 (+)
usp43b LOC106601383 coding upstream 80976 45358739 ~ 45451742 (+)
LOC110486541 LOC106607062 coding upstream 264298 45223469 ~ 45268420 (+)
hmox1a LOC106607056 coding upstream 377986 45152082 ~ 45154732 (+)
LOC110486547 LOC106607066 coding downstream 22868 45555818 ~ 45559601 (+)
LOC110486546 LOC106601396 coding downstream 26984 45559934 ~ 45614619 (+)
LOC110486548 LOC106607064 coding downstream 88583 45621533 ~ 45627020 (+)
LOC110486549 LOC106607014 coding downstream 99706 45632656 ~ 45646849 (+)
LOC110486552 NA coding downstream 145888 45678838 ~ 45681070 (+)
G1179369 NA non-coding upstream 61303 45471185 ~ 45471415 (+)
G1179360 NA non-coding upstream 70413 45462053 ~ 45462305 (+)
G1179359 NA non-coding upstream 71017 45461502 ~ 45461701 (+)
G1179352 NA non-coding upstream 74903 45457607 ~ 45457815 (+)
G1179350 NA non-coding upstream 75942 45456534 ~ 45456776 (+)
G1179446 NA non-coding downstream 120817 45653767 ~ 45654496 (+)
G1179445 NA non-coding downstream 122077 45655027 ~ 45656039 (+)
G1179448 NA non-coding downstream 129912 45662862 ~ 45663122 (+)
G1179452 NA non-coding downstream 136610 45669560 ~ 45669987 (+)
G1179453 NA non-coding downstream 137713 45670663 ~ 45670951 (+)
LOC110485192 LOC106601391 other upstream 2590 45529398 ~ 45554103 (+)
G1179362 NA other upstream 69775 45462588 ~ 45462943 (+)
G1179156 NA other upstream 219685 45312330 ~ 45313033 (+)
LOC110486526 smarca4 other upstream 562999 44967368 ~ 44996127 (+)
LOC110485188 LOC106601310 other upstream 606401 44878675 ~ 44943951 (+)
LOC118936304 LOC106601427 other downstream 641078 46173911 ~ 46176562 (+)
G1180047 NA other downstream 706194 46239144 ~ 46273601 (+)
LOC110485193 LOC106601421 other downstream 798768 46302751 ~ 46336386 (+)
G1181472 NA other downstream 1841213 47374163 ~ 47374477 (+)
tmem100a LOC106606948 other downstream 1935166 47468012 ~ 47471205 (+)

Expression


Co-expression Network