G1179658 (LOC105891918)


Basic Information

Item Value
gene id G1179658
gene name LOC105891918
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45607394 ~ 45627018 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1345322
AAGTATTTTTGGTTTTTAATCGAAAGGCAATGCAGTGCCTCCCAGTTAAGATCTTAACATATCACTTTAAATGGTACAGGTGGGACAAAACAATACATCTGCAATAACTAGTACAAAAGACTAAACATCACTGAGGAATGTAACAAATTAAATAAGTGAAAGAAAGCAAAACTGTGCGGCATCACTATTGCTGCgctgcaggaccccccccccccccggacttgatagaggttaaaaaaaaatccattgaACCCTGCGTAAAAAATTAAACAGTACAATTTGGGATAGAGTATAGGACTAAACAAGACAAAAAAGCAATAAGTTACCATCTTTACTTTCATGTGCATGTTTACTGTGGGAATTGAGGGGGCATTGGGTAAGGCACCATGGGCTGTGGTGCTTGTTGCTGCGTGAAGGGGAACTGTTGATGGCTCATGCCATTCTGTGCACCTCCTTGGTTGGCACTAAACTGTGGGGCCTGGAAGTTCTGCGTTGGGAACGCCCCGGCCTGGCTGGTACCATAGTTTGACTGGCCGTTGCTGCCGTAGCCGCTAAAACCATTGCCGCTTTTGTCAAAGCCACTTGCCCCATAGCCTCCACTCTGTGAATTTGTGCCAAAGACCTTCTTTGGTCCACTGTCAAAACCTCTATCGTTTTCCCTGTCCCTAAAGCTACTGAAGTCACGCCTGCCCCCGGAGGAGTACCTGTCCCGGCGGTCATCCCTAAATCCACTACCACCTCTGCCTCCCCTTGAATGACCAATTAGATTTACCTCCTCTGTCCGCCATCTGGAGGAGTTTAGGGTTGATGGCCTGGTTGGCCTCACGGAGCACAGCAACAAGGTCGCTGGCCTGCCTCATGTTGTTGGGGGTGAAGAAGGTGTAGGCTGTGCCAGTCTTTTGGCTCCGGGCAGTTCTGCCGATGCGGTGAATATAGTCCTCAGAGTTGTTGGGGTAGTCAAAGTTGATGACAAATTTCACATCTTCAACATCTGTAGGATGTGTTGCGGTGTGGCAAAAAAAGGAGCGCACAAAGATGCACACCACAACAGCCAGACCAAAAGAGCAAAGTTAGTACAACCAGTCACTGGATGTAGCCGTTTTTCCACTAGGCTGTAAAGAATAGCATTAGACAACTCCAGAAAGACTTAATCTGTGGGGATACTACAATGGGAAGAGAGAAACGATGCACACTCCAAATGCTTCCCAATACAGATAGCCCCTCAATTCTCAACAGCCCCCACCCCTAAAAAAAAAAGGAGCAGAAGTCCTACCATAAAGTATGCATTGACTAGTCCATTCCCATTGCAGAAAACTCCCCACACAATGCCAAGTGACTGCAGGGTGCTTCTACACAGTAAGGCCACTATGCGCACTGTTGCCTCCTCAAAACAAGGACCTTATGGTGATAACGAAGGCCCTTTATTCCCACACTCATAAGAAGCTCGCTAAAGGCCACACTGCAATGTCTTGCCAAGAACATAAACAATTGGGAAAAGCTAAAAGACTGAGCCACTTACTCCTGTGACCATAACAAAAGTACCCCCAGTCTCATCAAGGCAAGATATTCCCAGAACCAGTGTTCACGTGATCAAATGTCTCTCGTTGGCAGGTCTCGACATGACTTGAAACGCAGGTGAGGGAGGAGTGCGAGCTTGGATTTTTATCCCCAGCCAACCGACATGACCCACTGACACTAAGCGCCAGTAGCCACATCATTACAGAGGTGAACGTGTAATTGGACCTACAACTGGTCTCAAAACAGAAGTTTAGGAAACTGCCACATTTGTCACACATGCTTTGAGAAAAGCGACACCTTCCAGAACTCGATGACTTGCAATACAATGCCCAAACCGACATGCAAGACATGGAAACAGCAGAGCCTGGTGGAGCCATGAGCTTGGGTGTGAAGCAGTCCAAACCGATGCCTGAGAACAGCTGCATTTACAGGGGTGCAGCAGCTAACTCATTTAGGCCCCCTTTTGGGCAGCCCAGCGTGATAGTCAGCACTCAGACCCCGCCACCTCTGTATGTGACTGGGTGATGTCCCAGTCAGGACACCTCCAAGagtcctccttccccctctggaGACCTGGGCGTGTCATGCCAAGGCCCTGCCTCAAAAGACCGCTCCTTCAGATAGGGGAGAAACTCAGAAGGCAGAAGAGTTACAGAAAGAACCACTTTCTTTCAGGAAAAAAAAGTTGGTGCAaagagggtcaatgcagatagtccgggcaGCTATTTGTAGTTAGTAGTCTAATgtcttggggtagaagctgttcaggtcctgttggttccagacctgGTGCATTTACTTCTCTAACACACAATAGAAATCTTCTTTGTTCCATGATGATGCATATTGAGCATAACTTAGTTTTTTCCTCATGCTTTGCTGTGGATTCCTACCTGGCCACTCCTCCGTAGTCCAGCC

Function

NR:

description
probable ATP-dependent RNA helicase DDX5 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1345322 True 2436 lncRNA 0.48 3 45607394 45627018

Neighbor

gene id symbol gene type direction distance location
trnas-aga-60 NA coding downstream 80724 45526589 ~ 45526670 (-)
mchr1b LOC106601409 coding downstream 122716 45481000 ~ 45484678 (-)
LOC110486542 LOC106608160 coding downstream 274362 45300733 ~ 45333032 (-)
pik3r6b NA coding downstream 393739 45200981 ~ 45213655 (-)
LOC110485191 LOC106601377 coding downstream 411417 45194711 ~ 45195977 (-)
LOC100135782 LOC106607000 coding upstream 24878 45651896 ~ 45654777 (-)
LOC110486550 LOC106601398 coding upstream 27880 45654898 ~ 45677812 (-)
LOC110486551 fbf1 coding upstream 53840 45680858 ~ 45692892 (-)
LOC110486553 NA coding upstream 76989 45704005 ~ 45709228 (-)
LOC110486554 cygb coding upstream 83131 45710149 ~ 45716653 (-)
G1179629 NA non-coding downstream 58020 45548525 ~ 45549374 (-)
G1179630 NA non-coding downstream 59336 45547823 ~ 45548058 (-)
G1179625 NA non-coding downstream 68601 45538268 ~ 45538793 (-)
G1179318 NA non-coding downstream 151540 45453959 ~ 45455854 (-)
G1179346 NA non-coding downstream 161955 45444241 ~ 45445439 (-)
G1179685 NA non-coding upstream 12872 45639890 ~ 45640411 (-)
G1179692 NA non-coding upstream 32014 45659032 ~ 45659235 (-)
G1179693 NA non-coding upstream 32332 45659350 ~ 45661258 (-)
G1179695 NA non-coding upstream 34302 45661320 ~ 45661620 (-)
G1179621 LOC106607015 other downstream 74732 45531858 ~ 45532662 (-)
G1179619 LOC106601391 other downstream 77280 45529436 ~ 45530114 (-)
zgc:171844 LOC106607059 other downstream 414089 45182660 ~ 45193315 (-)
il-8 il-8 other downstream 520264 45085269 ~ 45087130 (-)
G1178996 NA other downstream 555370 45051576 ~ 45052024 (-)
LOC110486586 ubald2 other upstream 886439 46510585 ~ 46535713 (-)
LOC110486590 LOC105022923 other upstream 1256410 46827752 ~ 46915018 (-)
LOC110486593 LOC106606954 other upstream 1805778 47432406 ~ 47433949 (-)
LOC110486594 LOC106601485 other upstream 1835263 47460436 ~ 47466735 (-)
LOC110486618 LOC106606909 other upstream 2376013 47999581 ~ 48015951 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G151639 LOC103360002,LOC100712452,LOC105013158,LOC102214151,LOC101470166,LOC106937022,LOC103143670 non-coding NC_053126.1 CM020923.1 4130804 ~ 4165498 (-)
bowfin (Amia calva) G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 misc CM030125.1 CM030125.1 29926383 ~ 30028230 (-)