G1179465 (fbf1)


Basic Information

Item Value
gene id G1179465
gene name fbf1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45690496 ~ 45690869 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1345112
GGTCCAACTGTTAGCTTTGGTACCTTTTGTGTTAGTTGTTGGGGCaagaacatcatcatcatcatTAGTGAAGCTGAACCTCTTGTAGCCACGTGCCGTCGATGCAGGAGCAGAACTTGGCTTCTTCTCCTCAATGTCTGGCTCATCTGAGATTCCTCCTTTTAACTTGTTTCCTGATTTAGGAGGATTTTTCGTAGGTCCTCCAATGCCAGAGCCTTTACTCTGAGCTGGGGCTGAACTGGGCTT

Function

symbol description
fbf1 Involved in apical junction assembly and establishment of epithelial cell polarity. Acts upstream of or within cilium assembly. Located in centriole; centrosome; and spindle pole. Part of ciliary transition fiber. Colocalizes with apical junction complex and keratin filament.

NR:

description
fas-binding factor 1 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1345112 True 246 lncRNA 0.47 2 45690496 45690869

Neighbor

gene id symbol gene type direction distance location
LOC110486552 NA coding upstream 9426 45678838 ~ 45681070 (+)
LOC118938603 NA coding upstream 10100 45680324 ~ 45680396 (+)
LOC118938601 NA coding upstream 10333 45680092 ~ 45680163 (+)
LOC118938602 NA coding upstream 10895 45679530 ~ 45679601 (+)
LOC110486549 LOC106607014 coding upstream 43647 45632656 ~ 45646849 (+)
LOC110486555 LOC106606986 coding downstream 39598 45730467 ~ 45742507 (+)
LOC110486558 LOC106601405 coding downstream 122263 45813132 ~ 45881286 (+)
LOC110486560 LOC106606997 coding downstream 221386 45912255 ~ 45931007 (+)
LOC110486562 peca1 coding downstream 439709 46130578 ~ 46138965 (+)
LOC110486563 LOC106606981 coding downstream 474125 46164994 ~ 46167292 (+)
G1179453 NA non-coding upstream 19545 45670663 ~ 45670951 (+)
G1179452 NA non-coding upstream 20509 45669560 ~ 45669987 (+)
G1179448 NA non-coding upstream 27374 45662862 ~ 45663122 (+)
G1179445 NA non-coding upstream 34457 45655027 ~ 45656039 (+)
G1179879 LOC106601408 non-coding downstream 277201 45968070 ~ 45970177 (+)
G1179880 LOC106601408 non-coding downstream 283343 45974212 ~ 45975156 (+)
G1179952 NA non-coding downstream 389416 46080285 ~ 46080840 (+)
G1179953 NA non-coding downstream 390451 46081320 ~ 46085758 (+)
G1179970 NA non-coding downstream 426262 46117131 ~ 46117597 (+)
LOC110485192 LOC106601391 other upstream 160368 45529398 ~ 45554103 (+)
G1179362 NA other upstream 227553 45462588 ~ 45462943 (+)
G1179156 NA other upstream 377463 45312330 ~ 45313033 (+)
LOC110486526 smarca4 other upstream 720777 44967368 ~ 44996127 (+)
LOC110485188 LOC106601310 other upstream 764179 44878675 ~ 44943951 (+)
LOC118936304 LOC106601427 other downstream 483159 46173911 ~ 46176562 (+)
G1180047 NA other downstream 548275 46239144 ~ 46273601 (+)
LOC110485193 LOC106601421 other downstream 640849 46302751 ~ 46336386 (+)
G1181472 NA other downstream 1683294 47374163 ~ 47374477 (+)
tmem100a LOC106606948 other downstream 1777247 47468012 ~ 47471205 (+)

Expression


Co-expression Network