G1179779


Basic Information

Item Value
gene id G1179779
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45829292 ~ 45829928 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1345452
TGGTGGAATTGCCTTAGTGTGCCATGATCATAGGGTGAAGTTAATAGGTGAATGACATTCCACACGCTTGCTAATagtaaaggaggaggagagacctgacgttatgctgatgaggtaaaacgatgacactaccctataaataccgGCTATACTGATGAGGTAATGTTACAGgcactaccctataaataccgGCTATACTGATGAGGTAATGTTACAGgcactaccctataaataccgGCTATACTGATGAGGTAATGTTATAGgcactaccctataaataccgGCTATACTGATGAGGTAATGTTATAGgcactaccctataaataccgGCTATACTGATGAGGTAATGTTATAGgcactaccctataaataccggttatccagtcctcgggggcctgattggtgtcacagttttccccccatccctagcaaacacacctgatttaaactaattgcattttTAACTGAAGATCACGATTAgatgattattggagtcagg
>TU1345454
TGGTGGAATTGCCTTAGTGTGCCATGATCATAGGGTGAAGTTAATAGGTGAATGACATTCCACACGCTTGCTAATagtaaaggaggaggagagacctgacgttatgctgatgaggtaaaacgatgacactaccctataaataccgGCTATACTGATGAGGTAATGTTACAGgcactaccctataaataccgGCTATACTGATGAGGTAATGTTACAGgcactaccctataaataccgGCTATACTGATGAGGTAATGTTATAGgcactaccctataaataccgGCTATACTGATGAGGTAATGTTATAGgcactaccctataaataccgGCTATACTGATGAGGTAATGTTATAGgcactaccctataaataccgGCTATACTGATGAGGTAATGTTATAGgcactaccctataaataccggttatccagtcctcgggggcctgattggtgtcacagttttccccccatccctagcaaacacacctgatttaaactaattgcattttTAACTGAAGATCACGATTAgatgattattggagtcagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1345452 False 499 lncRNA 0.42 3 45829292 45829928
TU1345454 True 545 lncRNA 0.42 3 45829292 45829928

Neighbor

gene id symbol gene type direction distance location
LOC110486556 LOC106601411 coding downstream 82183 45744953 ~ 45747109 (-)
LOC110486554 cygb coding downstream 112639 45710149 ~ 45716653 (-)
LOC110486553 NA coding downstream 120064 45704005 ~ 45709228 (-)
LOC110486551 fbf1 coding downstream 136400 45680858 ~ 45692892 (-)
LOC110486550 LOC106601398 coding downstream 151480 45654898 ~ 45677812 (-)
LOC110486561 LOC106601408 coding upstream 138136 45968064 ~ 45977403 (-)
LOC110486567 LOC106606966 coding upstream 371098 46201026 ~ 46211745 (-)
recql5 LOC106601412 coding upstream 382250 46212178 ~ 46228955 (-)
LOC110486569 LOC106601418 coding upstream 400456 46230384 ~ 46235927 (-)
LOC118938311 LOC106601426 coding upstream 415537 46245465 ~ 46254192 (-)
G1179761 NA non-coding downstream 27104 45801903 ~ 45802188 (-)
G1179700 NA non-coding downstream 160002 45669025 ~ 45669290 (-)
G1179695 NA non-coding downstream 167672 45661320 ~ 45661620 (-)
G1179693 NA non-coding downstream 168034 45659350 ~ 45661258 (-)
G1179830 NA non-coding upstream 71122 45901050 ~ 45901314 (-)
G1179842 NA non-coding upstream 76445 45906373 ~ 45906656 (-)
G1179843 NA non-coding upstream 76751 45906679 ~ 45906902 (-)
G1180280 NA non-coding upstream 82202 45912130 ~ 45922166 (-)
G1180396 LOC106601427 non-coding upstream 344773 46174701 ~ 46176563 (-)
G1179621 LOC106607015 other downstream 296630 45531858 ~ 45532662 (-)
G1179619 LOC106601391 other downstream 299178 45529436 ~ 45530114 (-)
zgc:171844 LOC106607059 other downstream 635987 45182660 ~ 45193315 (-)
il-8 il-8 other downstream 742162 45085269 ~ 45087130 (-)
G1178996 NA other downstream 777268 45051576 ~ 45052024 (-)
LOC110486586 ubald2 other upstream 683529 46510585 ~ 46535713 (-)
LOC110486590 LOC105022923 other upstream 1053500 46827752 ~ 46915018 (-)
LOC110486593 LOC106606954 other upstream 1602868 47432406 ~ 47433949 (-)
LOC110486594 LOC106601485 other upstream 1632353 47460436 ~ 47466735 (-)
LOC110486618 LOC106606909 other upstream 2173103 47999581 ~ 48015951 (-)

Expression


Co-expression Network