Gene
RNA
| Item | Value |
|---|---|
| gene id | G1179880 |
| gene name | LOC106601408 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 45974212 ~ 45975156 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| neuronal pentraxin-1-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1345559 | True | 646 | lncRNA | 0.44 | 2 | 45974212 | 45975156 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110486560 | LOC106606997 | coding | upstream | 43205 | 45912255 ~ 45931007 (+) |
| LOC110486558 | LOC106601405 | coding | upstream | 92926 | 45813132 ~ 45881286 (+) |
| LOC110486555 | LOC106606986 | coding | upstream | 231705 | 45730467 ~ 45742507 (+) |
| LOC118938603 | NA | coding | upstream | 293816 | 45680324 ~ 45680396 (+) |
| LOC118938601 | NA | coding | upstream | 294049 | 45680092 ~ 45680163 (+) |
| LOC110486562 | peca1 | coding | downstream | 155422 | 46130578 ~ 46138965 (+) |
| LOC110486563 | LOC106606981 | coding | downstream | 189838 | 46164994 ~ 46167292 (+) |
| LOC118936304 | LOC106601427 | coding | downstream | 198755 | 46173911 ~ 46176562 (+) |
| LOC100136054 | LOC106601422 | coding | downstream | 204756 | 46179912 ~ 46183380 (+) |
| LOC110486565 | LOC106606967 | coding | downstream | 209250 | 46184406 ~ 46200116 (+) |
| G1179879 | LOC106601408 | non-coding | upstream | 4035 | 45968070 ~ 45970177 (+) |
| G1179465 | fbf1 | non-coding | upstream | 283343 | 45690496 ~ 45690869 (+) |
| LOC110486552 | NA | non-coding | upstream | 293148 | 45678838 ~ 45681070 (+) |
| G1179453 | NA | non-coding | upstream | 303261 | 45670663 ~ 45670951 (+) |
| G1179452 | NA | non-coding | upstream | 304225 | 45669560 ~ 45669987 (+) |
| G1179952 | NA | non-coding | downstream | 105129 | 46080285 ~ 46080840 (+) |
| G1179953 | NA | non-coding | downstream | 106164 | 46081320 ~ 46085758 (+) |
| G1179970 | NA | non-coding | downstream | 141975 | 46117131 ~ 46117597 (+) |
| G1180010 | LOC106601417 | non-coding | downstream | 225344 | 46200500 ~ 46202304 (+) |
| LOC110485192 | LOC106601391 | other | upstream | 444084 | 45529398 ~ 45554103 (+) |
| G1179362 | NA | other | upstream | 511269 | 45462588 ~ 45462943 (+) |
| G1179156 | NA | other | upstream | 661179 | 45312330 ~ 45313033 (+) |
| LOC110486526 | smarca4 | other | upstream | 1004493 | 44967368 ~ 44996127 (+) |
| LOC110485188 | LOC106601310 | other | upstream | 1047895 | 44878675 ~ 44943951 (+) |
| G1180047 | NA | other | downstream | 263988 | 46239144 ~ 46273601 (+) |
| LOC110485193 | LOC106601421 | other | downstream | 356562 | 46302751 ~ 46336386 (+) |
| G1181472 | NA | other | downstream | 1399007 | 47374163 ~ 47374477 (+) |
| tmem100a | LOC106606948 | other | downstream | 1492960 | 47468012 ~ 47471205 (+) |
