G1180058


Basic Information

Item Value
gene id G1180058
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46267530 ~ 46267925 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1345756
gcacatgtctataagccgcaggtgcctaccggtacattgaaacaaatgaactttacacagcctttaaacgaaacacggcttgtaacaaaaataaataggcttttaaacgaaacacggcttgtaacaaaaataaataggcttttaaacgaaacacggcttgtaacaaaaataaataggcttttaaacgaaacacggcttgtaacaaaaataaataggcttttaaacgaaacatggcttgtaacaaaaataaaaaaaatagcagtaaacagtagcctaccaagaaagtcattggtcactatcttcctcctcctgtgcact

Function

NR:

description
PREDICTED: periostin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1345756 True 318 lncRNA 0.36 2 46267530 46267925

Neighbor

gene id symbol gene type direction distance location
LOC110486571 nupl coding upstream 37147 46228993 ~ 46230383 (+)
LOC110486572 LOC106601412 coding upstream 41773 46219879 ~ 46226688 (+)
LOC110486565 LOC106606967 coding upstream 67414 46184406 ~ 46200116 (+)
LOC100136054 LOC106601422 coding upstream 84150 46179912 ~ 46183380 (+)
LOC118936304 LOC106601427 coding upstream 90972 46173911 ~ 46176562 (+)
LOC110486574 LOC106606976 coding downstream 6399 46274324 ~ 46294468 (+)
LOC110485193 LOC106601421 coding downstream 34826 46302751 ~ 46336386 (+)
mettl23 mettl23 coding downstream 215211 46483136 ~ 46485100 (+)
LOC110486580 mfs11 coding downstream 220175 46488100 ~ 46493732 (+)
LOC110486584 LOC106606957 coding downstream 226021 46493946 ~ 46509241 (+)
G1180008 LOC106601418 non-coding upstream 32469 46230385 ~ 46235061 (+)
G1180010 LOC106601417 non-coding upstream 65226 46200500 ~ 46202304 (+)
LOC110486562 peca1 non-coding upstream 132006 46130578 ~ 46138965 (+)
G1179970 NA non-coding upstream 149933 46117131 ~ 46117597 (+)
G1180070 NA non-coding downstream 28855 46296780 ~ 46297068 (+)
G1180071 NA non-coding downstream 30286 46298211 ~ 46298451 (+)
G1180093 NA non-coding downstream 79635 46347560 ~ 46348851 (+)
G1180133 NA non-coding downstream 122554 46390479 ~ 46442094 (+)
G1180161 NA non-coding downstream 158995 46426920 ~ 46431222 (+)
LOC110485192 LOC106601391 other upstream 737402 45529398 ~ 45554103 (+)
G1179362 NA other upstream 804587 45462588 ~ 45462943 (+)
G1179156 NA other upstream 954497 45312330 ~ 45313033 (+)
LOC110486526 smarca4 other upstream 1297811 44967368 ~ 44996127 (+)
G1181472 NA other downstream 1106238 47374163 ~ 47374477 (+)
tmem100a LOC106606948 other downstream 1200191 47468012 ~ 47471205 (+)
G1181636 NA other downstream 1281354 47549279 ~ 47549548 (+)
G1181955 NA other downstream 1474436 47742361 ~ 47743064 (+)

Expression


Co-expression Network