G1180070


Basic Information

Item Value
gene id G1180070
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46296780 ~ 46297068 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1345768
tgctattcattgactacagctcagcgttcaacaccatagtgccctcaaagctcatcactaagctaaggaccctgggaccaaacacctccctctgcaactggatcctggacttcctgacgggctgaccccaggtggtaagggtaggtaacaacacatctgtcactttgatcctcaacacagaggcccctcaggtgtgcatgctcagtcccctcctgtactccctgttcatccttgactgcatggccaggcacgactccaacaccatcattaagtttgcagacgacacaac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1345768 True 289 lncRNA 0.53 1 46296780 46297068

Neighbor

gene id symbol gene type direction distance location
LOC110486574 LOC106606976 coding upstream 2312 46274324 ~ 46294468 (+)
LOC110486573 LOC106601414 coding upstream 24410 46257363 ~ 46272370 (+)
LOC110486571 nupl coding upstream 66397 46228993 ~ 46230383 (+)
LOC110486572 LOC106601412 coding upstream 71023 46219879 ~ 46226688 (+)
LOC110486565 LOC106606967 coding upstream 96664 46184406 ~ 46200116 (+)
LOC110485193 LOC106601421 coding downstream 5683 46302751 ~ 46336386 (+)
mettl23 mettl23 coding downstream 186068 46483136 ~ 46485100 (+)
LOC110486580 mfs11 coding downstream 191032 46488100 ~ 46493732 (+)
LOC110486584 LOC106606957 coding downstream 196878 46493946 ~ 46509241 (+)
foxj1a LOC106601528 coding downstream 245124 46542192 ~ 46547913 (+)
G1180058 NA non-coding upstream 28855 46267530 ~ 46267925 (+)
G1180008 LOC106601418 non-coding upstream 61719 46230385 ~ 46235061 (+)
G1180010 LOC106601417 non-coding upstream 94476 46200500 ~ 46202304 (+)
LOC110486562 peca1 non-coding upstream 161256 46130578 ~ 46138965 (+)
G1180071 NA non-coding downstream 1143 46298211 ~ 46298451 (+)
G1180093 NA non-coding downstream 50492 46347560 ~ 46348851 (+)
G1180133 NA non-coding downstream 93411 46390479 ~ 46442094 (+)
G1180161 NA non-coding downstream 129852 46426920 ~ 46431222 (+)
G1180193 NA non-coding downstream 174850 46471918 ~ 46476079 (+)
G1180047 NA other upstream 23179 46239144 ~ 46273601 (+)
LOC118936304 LOC106601427 other upstream 120218 46173911 ~ 46176562 (+)
LOC110485192 LOC106601391 other upstream 766652 45529398 ~ 45554103 (+)
G1179362 NA other upstream 833837 45462588 ~ 45462943 (+)
G1179156 NA other upstream 983747 45312330 ~ 45313033 (+)
G1181472 NA other downstream 1077095 47374163 ~ 47374477 (+)
tmem100a LOC106606948 other downstream 1171048 47468012 ~ 47471205 (+)
G1181636 NA other downstream 1252211 47549279 ~ 47549548 (+)
G1181955 NA other downstream 1445293 47742361 ~ 47743064 (+)

Expression


Co-expression Network