G1180602


Basic Information

Item Value
gene id G1180602
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46503564 ~ 46504071 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1346398
GGGAAATGGCAGTACTAGTGTGGGCTTGTAAGGATTAGGTGACACCTGTATTAACTTGTAGGGGTTAGATTaaacctgtattaacttgtaggggttaggtgaaacctgtattaacttgtaaggattaggtgaaacctgtattaacttgtaaggattaggtgaaacctgtatggacttgtaaggattaggtgaaacctgtattaacttgtaaggattaggtgaaacctgtatggacttgtaagggttaggtgaaacctgtatggacttgtaaggattaggtgaaacctgtattaacttgtaaggattaggtgaaacctgtattaacttgtaaggATTAGGTGAAACCGGTATGGACTTGTAAGGATTAGGTGAAACCGGTATGGACTTGTAaggattaggtgaaacctgtGTGAGCTTG
>TU1346403
GGGAAATGGCAGTACTAGTGTGGGCTTGTAAGGATTAGGTGACACCTGTATTAACTTGTAGGGGTTAGATTaaacctgtattaacttgtaggggttaggtgaaacctgtattaacttgtaaggattaggtgaaacctgtatggacttgtaaggattaggtgaaacctgtattaacttgtaaggattaggtgaaacctgtatggacttgtaaggattaggtgaaacctgtatggacttgtaaggattaggtgaaacctgtattaacttgtaaggattaggtgaaacctgtattaacttgtaaggATTAGGTGAAACCGGTATGGACTTGTAAGGATTAGGTGAAACCGGTATGGACTTGTAaggattaggtgaaacctgtGTGAGCTTG
>TU1346405
GGGAAATGGCAGTACTAGTGTGGGCTTGTAAGGATTAGGTGACACCTGTATTAACTTGTAGGGGTTAGATTaaacctgtattaacttgtaggggttaggtgaaacctgtattaacttgtaaggattaggtgaaacctgtattaacttgtaaggattaggtgaaacctgtatggacttgtaaggattaggtgaaacctgtatggacttgtaaggattaggtgaaacctgtattaacttgtaaggattaggtgaaacctgtattaacttgtaaggattaggtgaaacctgtattaacttgtaaggATTAGGTGAAACCGGTATGGACTTGTAAGGATTAGGTGAAACCGGTATGGACTTGTAaggattaggtgaaacctgtGTGAGCTTG
>TU1346406
GGGAAATGGCAGTACTAGTGTGGGCTTGTAAGGATTAGGTGACACCTGTATTAACTTGTAGGGGTTAGATTaaacctgtattaacttgtaggggttaggtgaaacctgtattaacttgtaaggattaggtgaaacctgtatggacttgtaaggattaggtgaaacctgtatggacttgtaagggttaggtgaaacctgtatggacttgtaaggattaggtgaaacctgtattaacttgtaaggattaggtgaaacctgtattaacttgtaaggATTAGGTGAAACCGGTATGGACTTGTAAGGATTAGGTGAAACCGGTATGGACTTGTAaggattaggtgaaacctgtGTGAGCTTG

Function

NR:

description
PREDICTED: uncharacterized protein C1235.01-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1346398 False 418 lncRNA 0.39 2 46503564 46504071
TU1346403 False 388 lncRNA 0.39 3 46503564 46504071
TU1346405 False 388 lncRNA 0.39 3 46503564 46504071
TU1346406 True 358 lncRNA 0.40 3 46503564 46504071

Neighbor

gene id symbol gene type direction distance location
LOC110486583 srsf2 coding downstream 15682 46484771 ~ 46487882 (-)
LOC110486581 jmjd6 coding downstream 20701 46472494 ~ 46482863 (-)
LOC110486579 NA coding downstream 35221 46440996 ~ 46468343 (-)
LOC110486578 st6galnac2 coding downstream 75298 46422708 ~ 46428266 (-)
LOC110486575 LOC106596896 coding downstream 81183 46336544 ~ 46422381 (-)
LOC110486586 ubald2 coding upstream 6514 46510585 ~ 46535713 (-)
LOC118938312 NA coding upstream 49881 46553952 ~ 46561085 (-)
LOC110486590 LOC105022923 coding upstream 323681 46827752 ~ 46915018 (-)
LOC110485195 LOC102192139 coding upstream 425432 46929363 ~ 47345934 (-)
LOC110486593 LOC106606954 coding upstream 928335 47432406 ~ 47433949 (-)
G1180601 LOC106606957 non-coding downstream 2774 46500561 ~ 46500790 (-)
G1180599 NA non-coding downstream 5588 46497745 ~ 46497976 (-)
G1180598 LOC106606957 non-coding downstream 8842 46494180 ~ 46494722 (-)
G1180582 NA non-coding downstream 57251 46443255 ~ 46446313 (-)
G1180578 NA non-coding downstream 60380 46437922 ~ 46443184 (-)
G1180603 NA non-coding upstream 17 46504088 ~ 46504304 (-)
G1180605 NA non-coding upstream 2006 46506077 ~ 46506509 (-)
G1180606 NA non-coding upstream 3175 46507246 ~ 46508037 (-)
G1180607 NA non-coding upstream 4129 46508200 ~ 46510244 (-)
G1180610 NA non-coding upstream 15335 46519406 ~ 46522622 (-)
G1179621 LOC106607015 other downstream 970902 45531858 ~ 45532662 (-)
G1179619 LOC106601391 other downstream 973450 45529436 ~ 45530114 (-)
zgc:171844 LOC106607059 other downstream 1310259 45182660 ~ 45193315 (-)
il-8 il-8 other downstream 1416434 45085269 ~ 45087130 (-)
G1178996 NA other downstream 1451540 45051576 ~ 45052024 (-)
LOC110486594 LOC106601485 other upstream 958210 47460436 ~ 47466735 (-)
LOC110486618 LOC106606909 other upstream 1498960 47999581 ~ 48015951 (-)

Expression


Co-expression Network