G1180606


Basic Information

Item Value
gene id G1180606
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46507246 ~ 46508037 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1346410
TATTCCAGTTAGTGAAATTAGTTTATATGTTGCAAATGGGTAATGACGCTGGTGTTGACCTACCTGAGCGGCTGCGCTGGGTTTTGGCACTCTGGGGTCGCACAGGGGTCACACAGCCCGGCTCTGTGCAGCCAGGCTTCTGGAACTGGGAGCGCATGATCTTGTCTTTGCTCTTGCACATGCCTGCTGTCATTAAAACAGCAATGTCACATCATAACAGGACCCCACCACAACCATAGCCATACTGTACCCTCACACCCATACCAGACATACAACTTCTTCCAAGTCTTGAGCAAAATACTCTTTCAATACTATTTTGACTCATTCAATGGTCTCATAAATGACTGGGAATCACAACACCAAATCCCAGGCATAAAACAGGACAGcacatctccctctttcttccttcAGGGCTTGATTTGTATGAACAGATGAAAAGGATATTAAGATAGAAATGATGGAATGCAAGCAGTGTTACCCCAGGTTATATTTACAGTCTGTTACAGACCCCAGGCCTGATCTTCTATAACATAGTAACATTGGGTTCTTTCCAGTGTGGAACACTATACCAACCAGAGCCCCTCCCCCAACCCCAGTGCAGCCCATTCTTATTGCTAACTCACTTCCTTAAACCCTCGTAAAATACTCCCTCCCATAAACTaagctcctctctccttccctaaaTCTCCAGACCCTCGTTCCTAATCTTTCATCATACACCACTTTAACACTGTACTGTATCCCTCCTCAAATTCTCATTCCCAACCAAACAGCCCACTTTCTCAACCCAAC

Function

NR:

description
PREDICTED: glutamine-rich protein 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1346410 True 792 lncRNA 0.45 1 46507246 46508037

Neighbor

gene id symbol gene type direction distance location
LOC110486583 srsf2 coding downstream 19364 46484771 ~ 46487882 (-)
LOC110486581 jmjd6 coding downstream 24383 46472494 ~ 46482863 (-)
LOC110486579 NA coding downstream 38903 46440996 ~ 46468343 (-)
LOC110486578 st6galnac2 coding downstream 78980 46422708 ~ 46428266 (-)
LOC110486575 LOC106596896 coding downstream 84865 46336544 ~ 46422381 (-)
LOC110486586 ubald2 coding upstream 2548 46510585 ~ 46535713 (-)
LOC118938312 NA coding upstream 45915 46553952 ~ 46561085 (-)
LOC110486590 LOC105022923 coding upstream 319715 46827752 ~ 46915018 (-)
LOC110485195 LOC102192139 coding upstream 421466 46929363 ~ 47345934 (-)
LOC110486593 LOC106606954 coding upstream 924369 47432406 ~ 47433949 (-)
G1180605 NA non-coding downstream 737 46506077 ~ 46506509 (-)
G1180603 NA non-coding downstream 2942 46504088 ~ 46504304 (-)
G1180602 NA non-coding downstream 3175 46503564 ~ 46504071 (-)
G1180601 LOC106606957 non-coding downstream 6456 46500561 ~ 46500790 (-)
G1180599 NA non-coding downstream 9270 46497745 ~ 46497976 (-)
G1180607 NA non-coding upstream 163 46508200 ~ 46510244 (-)
G1180610 NA non-coding upstream 11369 46519406 ~ 46522622 (-)
G1180611 NA non-coding upstream 11666 46519703 ~ 46521305 (-)
G1180621 NA non-coding upstream 34177 46542214 ~ 46542414 (-)
G1180622 LOC106606962 non-coding upstream 35083 46543120 ~ 46544068 (-)
G1179621 LOC106607015 other downstream 974584 45531858 ~ 45532662 (-)
G1179619 LOC106601391 other downstream 977132 45529436 ~ 45530114 (-)
zgc:171844 LOC106607059 other downstream 1313941 45182660 ~ 45193315 (-)
il-8 il-8 other downstream 1420116 45085269 ~ 45087130 (-)
G1178996 NA other downstream 1455222 45051576 ~ 45052024 (-)
LOC110486594 LOC106601485 other upstream 954244 47460436 ~ 47466735 (-)
LOC110486618 LOC106606909 other upstream 1494994 47999581 ~ 48015951 (-)

Expression


Co-expression Network