G1180607


Basic Information

Item Value
gene id G1180607
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46508200 ~ 46510244 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1346411
TGGAGTTGTGTAAAACAGTAGATATATTTACGTACCACAAGTAAAATTCATTGCAGACAGTCAATGAGTCAACATATGTTCACATAACAGTTATATGGACATCATATGACACATCACATATTCCATGAAGGCCCATTTATCTTTCAAAACAAAGATACATCTACCAATGAAAATCTTACATTCAGATTAACTGCCTGTCTTAAATACTCTCCTGAAATACCTTTCAGTAGCATCACTACTCCTGAATACGTCCAAATGCTATGAAAGGGATCACTTAtactcagtttattaggtacaccacctcaTTCACGAGTCAGGAGGCTGTGGCTTGCTATACAAAGCAGGTAGACAGGCATCCAGGAATTCAGTTACTGTCTGAATGAATATTAGACGgaaaaacgagtgacctaagcgactgaaTGCACAACTCAttgatccttgtcacggatgggctattgcagcagccGACCACACCAGGTTCTACTCCTATCAGCTTAAAACAAGCAGCTCCAGTTGtcacgcgatcaccaacactggactaTTGATGAGTGGAAAAACGTTGCCTGGTTCGacaaatcccggttcctgttgcatcatgctgatgacagagtcaggatttggcgtaaccacatgagtccatggccccatcctgcctgctgtcaacggtacaggctggtggcagtggtgtaatggtgtgggaaaTGTGTTCCTGGCAAAGTTCgatcccttgataccaattgagcaatgtctccatgccctgaagaattcaggctgttctagaGGCAAAGGGAGGTCCGACCCGGtactaataaactggccactgggTGTGTAAGGCATGGATAGATAAATATACATCATATTTCACATTGACACAAAATGTGTGTAAGCAAAGCCCCTGCTTCTAGGAAACAGTCACCCCGTTCCTCAATGACAGTACAGTTTGTCCTTTCAAGTTTATTAATTCATATCCTGTCCTACATTCACACAGGCTTTTTGaactgtgcccccccccccccgtgccaCGCCCCGGCCCACGGACAACTGCAGTTGAGTGCTGACATGGCGCTACGCTAAAAGTATGCTATGATACCCAATGCTGTGCCATGGTTAAAAATGATACACTATGCCAGAGTGAGGCACACATAGCGAACCCCCTTGTttaaaacacacagacaccaggaGACTGCTGTAACTGGACACAGGCACGATGACATTCGAAGGGAACGCCATCTGGGCCGATTTTACAACCCTGGCTGCTTTGCTTCCCCAATAGATGCAGGTGGCTGGCTACCATTGTTATGAGTCCACGACAGGGGTACATTTTTGTGGTAATGACAGCACGCATGAATGTCTTTCCTCTTAACATGTGATGGAACAACTTGAGACTCTAATACAATGAATCAGACGTTACAGAAATTGGGTCTGTGTGAGGGAAGACATTTCAAGCCCTTAATGATACCACTCTATAAGACCCTATATGTCAAAGGAATTGCTCCATGGTGGTATTCTTCTGCATCCAAACAGTCTGGTATTTGAGGTCACCTGCCTGAAAGCTTCTCTATGAAGGTCATTGAAAATCAGGCATCATAAACCAAAATTGTAATGTAGCCACACGTAAGGTATTTGACCTGTAAAGCTACACCTTGGAAATGTGACTCAGCTATTTTGTGACTCAGctattttgttgcattgaaaCAGTGTACATAGGTCCCAGAATTGTGTTCTTCCATTACCATCCATAAATAACTGACTAATATCAGACTTGATTTTCACAACGTCTGTATGCTCCATTACAAAATGGAGACCAGGATaccctcctgctgctgctgtaaaCGGTTTATTAAAATAAGGTGTGTGGGGCACTCCATCGCCCCCTACAGGATGATGACGGGCTCTTCCTCCGACTGGCTCAGGTCCACGTGAAGCTCCAGATCTTGCTGCAGCAGCTCGCTGGTGGTGTCAGCATGGGACgagctctggggaagggtagcctGGGAAAGGCAGCCTAAAGAAGACATGGGCCGGTCCCGCACAGAGCTGCCTGA

Function

NR:

description
PREDICTED: glutamine-rich protein 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1346411 True 2045 lncRNA 0.46 1 46508200 46510244

Neighbor

gene id symbol gene type direction distance location
LOC110486583 srsf2 coding downstream 20318 46484771 ~ 46487882 (-)
LOC110486581 jmjd6 coding downstream 25337 46472494 ~ 46482863 (-)
LOC110486579 NA coding downstream 39857 46440996 ~ 46468343 (-)
LOC110486578 st6galnac2 coding downstream 79934 46422708 ~ 46428266 (-)
LOC110486575 LOC106596896 coding downstream 85819 46336544 ~ 46422381 (-)
LOC110486586 ubald2 coding upstream 341 46510585 ~ 46535713 (-)
LOC118938312 NA coding upstream 43708 46553952 ~ 46561085 (-)
LOC110486590 LOC105022923 coding upstream 317508 46827752 ~ 46915018 (-)
LOC110485195 LOC102192139 coding upstream 419259 46929363 ~ 47345934 (-)
LOC110486593 LOC106606954 coding upstream 922162 47432406 ~ 47433949 (-)
G1180606 NA non-coding downstream 163 46507246 ~ 46508037 (-)
G1180605 NA non-coding downstream 1691 46506077 ~ 46506509 (-)
G1180603 NA non-coding downstream 3896 46504088 ~ 46504304 (-)
G1180602 NA non-coding downstream 4129 46503564 ~ 46504071 (-)
G1180601 LOC106606957 non-coding downstream 7410 46500561 ~ 46500790 (-)
G1180610 NA non-coding upstream 9162 46519406 ~ 46522622 (-)
G1180611 NA non-coding upstream 9459 46519703 ~ 46521305 (-)
G1180621 NA non-coding upstream 31970 46542214 ~ 46542414 (-)
G1180622 LOC106606962 non-coding upstream 32876 46543120 ~ 46544068 (-)
G1180645 NA non-coding upstream 71518 46581762 ~ 46600079 (-)
G1179621 LOC106607015 other downstream 975538 45531858 ~ 45532662 (-)
G1179619 LOC106601391 other downstream 978086 45529436 ~ 45530114 (-)
zgc:171844 LOC106607059 other downstream 1314895 45182660 ~ 45193315 (-)
il-8 il-8 other downstream 1421070 45085269 ~ 45087130 (-)
G1178996 NA other downstream 1456176 45051576 ~ 45052024 (-)
LOC110486594 LOC106601485 other upstream 952037 47460436 ~ 47466735 (-)
LOC110486618 LOC106606909 other upstream 1492787 47999581 ~ 48015951 (-)

Expression


Co-expression Network