G1180622 (LOC106606962)


Basic Information

Item Value
gene id G1180622
gene name LOC106606962
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46543120 ~ 46544068 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1346433
CCAGGTGGGGTCAGCATGGCGGAAGTAGCAGAAGTTGTCAGTGATCCACTTGTAGATGCAGGAGAGGGGGATCTTGGTCTTCTTGCTGGCCTGCATGGCCATACAGATGAGTGTGGCGTAGGAGTAAGGTGGTTTGATATGAGGGTTTGTCTTGTAGTCCACCTCATCGGGGCAGTGACCATGGGACACCAGGCTAGGGAGGGCTGACAGGGACTGCATCCTACAATAGGCTGCTGCTGTGGGCTTGCCTGGGGTGAGGGGCATCCCTATGGATGCAGGGTCACCAGCCAGAGGGGAAGCGGGAGCCTCAGAGCCCAGCTGCTGATGGCCGAAGAAGTGAGGCTGGTGGTGAGTGGAGAGAGTAGCCTGTTGAGGCCCATTGGCATTGAGAATAGAGAACTCCTGCAGCCACTGCAGGCTGGTCAGGCTGTCATCCAGGTTGTCAGAGCCCCCAGTGCTGCTGGAGCCTGCTGAGGCTGAGCTGTCGTCCAGGTCCAGCTCCTCAGAATGAGCAGCGGCAGTCACCACTTCCTCCTCCAGCCCCACCGAGCCCTCGGGCCAGGGGTCTGCACAGCTTAGAGACAGCATGGTCCTCCCTCCGCTCCGATGGTTAAAGCTCCCCCCTATACCACCAGACAACAGCCTGACAAGGAGAAAATATACACCCAACATGAACAAAGCTGAA
>TU1346435
CTTTGGAAAGAACTGTGCTCTTACTCGTTCCTGTTAAAGAAAAACTGTGCCCAGCTGCATCTTGGCCCCACTCCAAAACACACAGAGCCCTGTGTGGCAGATGCTGaagaggactctctctctctgtctctcactctctggctGCTCGAGACATAGTCAAGTTACGAATGTGACTGAGAGCCTCTCACAGGACCTAGTCTAAAGCATACTATTTGAGCCATTTTcaagtgtgggtgtgggtgtgactTTAGCAACATTTACCTGCCAGGTGGGGTCAGCATGGCGGAAGTAGCAGAAGTTGTCAGTGATCCACTTGTAGATGCAGGAGAGGGGGATCTTGGTCTTCTTGCTGGCCTGCATGGCCATACAGATGAGTGTGGCGTAGGAGTAAGGTGGTTTGATATGAGGGTTTGTCTTGTAGTCCACCTCATCGGGGCAGTGACCATGGGACACCAGGCTAGGGAGGGCTGACAGGGACTGCATCCTACAATAGGCTGCTGCTGTGGGCTTGCCTGGGGTGAGGGGCATCCCTATGGATGCAGGGTCACCAGCCAGAGGGGAAGCGGGAGCCTCAGAGCCCAGCTGCTGATGGCCGAAGAAGTGAGGCTGGTGGTGAGTGGAGAGAGTAGCCTGTTGAGGCCCATTGGCATTGAGAATAGAGAACTCCTGCAGCCACTGCAGGCTGGTCAGGCTGTCATCCAGGTTGTCAGAGCCCCCAGTGCTGCTGGAGCCTGCTGAGGCTGAGCTGTCGTCCAGGTCCAGCTCCTCAGAATGAGCAGCGGCAGTCACCACTTCCTCCTCCAGCCCCACCGAGCCCTCGGGCCAGGGGTCTGCACAGCTTAGAGACAGCATGGTCCTCCCTCCGCTCCGATGGTTAAAGCTCCCCCCTATACCACCAGACAACAGCCTGACAAGGAGAAAATATACACCCAACATGAACAAAGCTGAA
>TU1346434
CCAGGTGGGGTCAGCATGGCGGAAGTAGCAGAAGTTGTCAGTGATCCACTTGTAGATGCAGGAGAGGGGGATCTTGGTCTTCTTGCTGGCCTGCATGGCCATACAGATGAGTGTGGCGTAGGAGTAAGGTGGTTTGATATGAGGGTTTGTCTTGTAGTCCACCTCATCGGGGCAGTGACCATGGGACACCAGGCTAGGGAGGGCTGACAGGGACTGCATCCTACAATAGGCTGCTGCTGTGGGCTTGCCTGGGGTGAGGGGCATCCCTATGGATGCAGGGTCACCAGCCAGAGGGGAAGCGGGAGCCTCAGAGCCCAGCTGCTGATGGCCGAAGAAGTGAGGCTGGTGGTGAGTGGAGAGAGTAGCCTGTTGAGGCCCATTGGCATTGAGAATAGAGAACTCCTGCAGCCACTGCAGGCTGGTCAGGCTGTCATCCAGGTTGTCAGAGCCCCCAGTGCTGCTGGAGCCTGCTGAGGCTGAGCTGTCGTCCAGGTCCAGCTCCTCAGAATGAGCAGCGGCAGTCACCACTTCCTCCTCCAGCCCCACCGAGCCCTCGGGCCAGGGGTCTGCACAGCTTAGAGACAGCATGGTCCTCCCTCCGCTCCGATGGTTAAAGCTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1346433 False 685 lncRNA 0.58 1 46543120 46543804
TU1346435 False 949 lncRNA 0.55 1 46543120 46544068
TU1346434 True 619 lncRNA 0.59 1 46543186 46543804

Neighbor

gene id symbol gene type direction distance location
LOC110486586 ubald2 coding downstream 7407 46510585 ~ 46535713 (-)
LOC110486583 srsf2 coding downstream 55238 46484771 ~ 46487882 (-)
LOC110486581 jmjd6 coding downstream 60257 46472494 ~ 46482863 (-)
LOC110486579 NA coding downstream 74777 46440996 ~ 46468343 (-)
LOC110486578 st6galnac2 coding downstream 114854 46422708 ~ 46428266 (-)
LOC118938312 NA coding upstream 9884 46553952 ~ 46561085 (-)
LOC110486590 LOC105022923 coding upstream 283684 46827752 ~ 46915018 (-)
LOC110485195 LOC102192139 coding upstream 385435 46929363 ~ 47345934 (-)
LOC110486593 LOC106606954 coding upstream 888338 47432406 ~ 47433949 (-)
LOC110486594 LOC106601485 coding upstream 916368 47460436 ~ 47466735 (-)
G1180621 NA non-coding downstream 706 46542214 ~ 46542414 (-)
G1180610 NA non-coding downstream 20498 46519406 ~ 46522622 (-)
G1180611 NA non-coding downstream 21815 46519703 ~ 46521305 (-)
G1180607 NA non-coding downstream 32876 46508200 ~ 46510244 (-)
G1180606 NA non-coding downstream 35083 46507246 ~ 46508037 (-)
G1180645 NA non-coding upstream 37694 46581762 ~ 46600079 (-)
G1180729 NA non-coding upstream 133492 46677560 ~ 46744083 (-)
G1181081 NA non-coding upstream 266356 46810424 ~ 46906931 (-)
G1181243 NA non-coding upstream 534566 47078634 ~ 47078983 (-)
G1179621 LOC106607015 other downstream 1010458 45531858 ~ 45532662 (-)
G1179619 LOC106601391 other downstream 1013006 45529436 ~ 45530114 (-)
zgc:171844 LOC106607059 other downstream 1349815 45182660 ~ 45193315 (-)
il-8 il-8 other downstream 1455990 45085269 ~ 45087130 (-)
LOC110486618 LOC106606909 other upstream 1458963 47999581 ~ 48015951 (-)
G1183013 NA other upstream 1481033 48025101 ~ 48025776 (-)

Expression


Co-expression Network