G1180729


Basic Information

Item Value
gene id G1180729
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46677560 ~ 46744083 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1346547
agccagcaaatctcttgtcaaattgactgaggccagcaaatctcgttgtcaaattgactatagccagcaaatctcattgtcaaattgattggagccagcaaatctcatggtcaaattgactggagccagcaaatctcttgtcaaattgacaggagccagcaaatctcgttgtcaaattgactatagccagcaaatctcttgtcaaattgactggagccagcaaatctcttgttgtcaaattgactggagccagcaaatctcgttgtcaaattgactatagccagcaaatctcgttgtcaaattgactggagccagcaaatctcttgttgtcaaattgactggagccagcaaatctcttgttgtcaaattgactggagccagcaaatctcttgttgtcaaattgactggaggcagcaaatctcttgtcaaattgactgaggccagcaaatctcgttgtcaaattgactggagccagcaaatctcattgtcaaattgactggagccagcaaatctcgttgtcaaattgactggagccagcaaatctcttgtcaaattgactggagccagcaaatctcattgtcaaattgactggagccagcaaatctcgttgtcaaattgactggagccagcaaatctcttgttgtcaaattgactggagccagcaaatctcgtttgTCAAATTGaatatagccagcaaatctcttgtcaaattgactgaggccagcaaatctcattgtcaaattgactgaggccagtaaatctcttgtcaaattgactggagccagcaaatctcgttgtcaaattgactatatccagcaaatctcttgtcaaattgactacagccagcaaatctcttgtcaaattgactatagccagcaaatctcttgtcaaattgactatagcc

Function

NR:

description
PREDICTED: protein phosphatase 1 regulatory subunit 12A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1346547 True 904 lncRNA 0.42 2 46677560 46744083

Neighbor

gene id symbol gene type direction distance location
LOC118938312 NA coding downstream 116475 46553952 ~ 46561085 (-)
LOC110486586 ubald2 coding downstream 141847 46510585 ~ 46535713 (-)
LOC110486583 srsf2 coding downstream 189678 46484771 ~ 46487882 (-)
LOC110486581 jmjd6 coding downstream 194697 46472494 ~ 46482863 (-)
LOC110486579 NA coding downstream 209217 46440996 ~ 46468343 (-)
LOC110486590 LOC105022923 coding upstream 83669 46827752 ~ 46915018 (-)
LOC110485195 LOC102192139 coding upstream 185420 46929363 ~ 47345934 (-)
LOC110486593 LOC106606954 coding upstream 688323 47432406 ~ 47433949 (-)
LOC110486594 LOC106601485 coding upstream 716353 47460436 ~ 47466735 (-)
LOC110486596 LOC106606950 coding upstream 764841 47508924 ~ 47522717 (-)
G1180645 NA non-coding downstream 77481 46581762 ~ 46600079 (-)
G1180622 LOC106606962 non-coding downstream 133492 46543120 ~ 46544068 (-)
G1180621 NA non-coding downstream 135146 46542214 ~ 46542414 (-)
G1180610 NA non-coding downstream 154938 46519406 ~ 46522622 (-)
G1180611 NA non-coding downstream 156255 46519703 ~ 46521305 (-)
G1181081 NA non-coding upstream 66341 46810424 ~ 46906931 (-)
G1181243 NA non-coding upstream 334551 47078634 ~ 47078983 (-)
G1181305 NA non-coding upstream 420459 47164542 ~ 47165117 (-)
G1181473 NA non-coding upstream 629860 47373943 ~ 47374514 (-)
G1179621 LOC106607015 other downstream 1144898 45531858 ~ 45532662 (-)
G1179619 LOC106601391 other downstream 1147446 45529436 ~ 45530114 (-)
zgc:171844 LOC106607059 other downstream 1484255 45182660 ~ 45193315 (-)
il-8 il-8 other downstream 1590430 45085269 ~ 45087130 (-)
LOC110486618 LOC106606909 other upstream 1258948 47999581 ~ 48015951 (-)
G1183013 NA other upstream 1281018 48025101 ~ 48025776 (-)

Expression


Co-expression Network