G1180743


Basic Information

Item Value
gene id G1180743
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46747266 ~ 46754851 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1346562
ggctatagtcaatttgacaagatatttgctggctccagtcaatttgacaacgagatttgctggcctcagtcaatttgacaagagatttgctggctccagtcaatttgacaacaagagatttgcctgctccagtcaatttgacaacaagagatttgctggctatagtcaatttgacaacaagagatttgctggctccagtcaatttgacaacgagatttgctggctatagtcaatttgacaacgagatttgctggcctcagtcaatttgacaagagatttgctgcctccagtcaatttgacaacaagagatttgctggctccagtcaatttgacaacaagagatttgctggctccagtcaatttgacaacaagagatttgctggctccagtcaatttgacaacgagatttgctggctatagtcaatttgacaacgagatttgctggctccagtcaatttgacaacaagagatttgctggctccagtcaatttgacaagagatttgctggctatagtcaatttgacaacgagatttgctggctcctgtcaatttgacaagagatttgctggctccagtcaatttgaccatgagatttgctggctccaatcaatttgacaatgagatttgctggctatagtcaatttgacaacgagatttgctggcctcagtcaatttgacaagagatttgctggctccagtcaatttgacaacgagatttgctggcctcagtcaatttgacaacaagagatttgctggctccaatcaatttgacaacaagatatttgctggctatagtcaatttgacaacaagagatttgctggctccagtcaatttgacaatgagatttgctggctccagtcaatttgacaacgagatttgctggctccagtcaatttgacaatgagatttgctggcctcagtcaatttgacaacaagagatttgctggctccagtcaatttgacaacaagatatttgctggctatagtcaatttgacaacaagagatttgctggctccagtcaatttgacaatgagatttgctggctatagtcaatttgacaacgagatttgctggcctttgtcaatttgacaacgagatttgctggcctcagtcaatttgacaacaagaaatttgctggctccagtcaatttgacaacaagagatttgctggctccagtcaatttgacaacgagagttgctggctccagtcaatttgacaatgagatttgctggcctcagtcaatttgacaacaacagatttgctggctccagtcaatttgacaacaagagatttgctggctattgTCAATTttacaacaagagatttgctcgctccagtcaatttgacaacgagatttgctggctatagtc

Function

NR:

description
PREDICTED: protein phosphatase 1 regulatory subunit 12A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1346562 True 1373 lncRNA 0.41 3 46747266 46754851

Neighbor

gene id symbol gene type direction distance location
LOC110486589 LOC106606959 coding upstream 74919 46571242 ~ 46672347 (+)
LOC110486588 LOC106602603 coding upstream 181594 46559808 ~ 46565672 (+)
foxj1a LOC106601528 coding upstream 199353 46542192 ~ 46547913 (+)
LOC110486584 LOC106606957 coding upstream 238025 46493946 ~ 46509241 (+)
LOC110486580 mfs11 coding upstream 253534 46488100 ~ 46493732 (+)
LOC118938555 NA coding downstream 61156 46816007 ~ 46816999 (+)
LOC118938083 NA coding downstream 63687 46818538 ~ 46822978 (+)
LOC110486591 LOC106606947 coding downstream 640479 47395330 ~ 47400760 (+)
LOC110486592 LOC106606958 coding downstream 648923 47403774 ~ 47410322 (+)
tmem100a LOC106606948 coding downstream 713161 47468012 ~ 47471205 (+)
G1180716 NA non-coding upstream 34149 46678134 ~ 46713117 (+)
G1180211 NA non-coding upstream 208135 46538779 ~ 46539131 (+)
G1180210 NA non-coding upstream 208581 46538308 ~ 46538685 (+)
G1180205 NA non-coding upstream 221998 46524198 ~ 46525268 (+)
G1180758 NA non-coding downstream 6881 46761732 ~ 46813138 (+)
G1180776 NA non-coding downstream 55573 46810424 ~ 46827683 (+)
G1180779 NA non-coding downstream 60984 46815835 ~ 46819263 (+)
G1180844 NA non-coding downstream 173331 46928182 ~ 46928398 (+)
G1180845 NA non-coding downstream 174673 46929524 ~ 46932162 (+)
LOC110485193 LOC106601421 other upstream 410988 46302751 ~ 46336386 (+)
G1180047 NA other upstream 473665 46239144 ~ 46273601 (+)
LOC118936304 LOC106601427 other upstream 570704 46173911 ~ 46176562 (+)
LOC110485192 LOC106601391 other upstream 1217138 45529398 ~ 45554103 (+)
G1179362 NA other upstream 1284323 45462588 ~ 45462943 (+)
G1181472 NA other downstream 619312 47374163 ~ 47374477 (+)
G1181636 NA other downstream 794428 47549279 ~ 47549548 (+)
G1181955 NA other downstream 987510 47742361 ~ 47743064 (+)
G1182153 NA other downstream 1364762 48119613 ~ 48122575 (+)

Expression


Co-expression Network