G1181081



Basic Information


Item Value
gene id G1181081
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46810424 ~ 46906931 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1346913
cagagttcggagagagagagagacctggatgACAATACACTGTAGCCGCTCATTCAGTTTAGACACATTTTACTTTTCTCTTCAATCATTTCGGTATCCTTCCATTTAAATTTAGACACATAAAAAGAGAATACTTTTGTTATCAAACCACAGAAATGTCTTCCACGACTTTTGTAAGTCCAGGAGCTCTAGGGAAAGCTGTCTAAGGCTTTTTGGCTCCGGTGGTCACTGATGTAATTTGACTTGGATTTTAAAAGTGAAAATGTTTTAATTATCATctgtatttccattgttactCTACTCTTTAATAAATGACAAGGCCACTTCAAGGCCCTTTTGGAATTGTCTATATTTTGAGTAAAACTCCACATATGGTCTGTAATGCCAGCAGAATGGAATAGCAGGTCAGGTCCCAGGACTCTAGATGTTTGTCTGCTTCAGTTCATTAAGTGGGCCAcctctgttgactcatccagaaAGGTCACTGGATATCAGATCCACTAGACAGCGCTGTGTTCAGTTCACATGCCAACAATAGGGCAGACAAGTCAGCTACAGCTCCTTAAAAGACAAGAACACATTTGTATTTAACTAACACCCCACATAATCTGTTCAGAAATTGTGATATGTCATCAATCTATCAAATCACTGCATGAGTATTCTGCTGAACatcataaatacatttaaaaaatatgaaatagAAACATGTTCAGTTAGGTAACAAATCCAAACAGAGGCTTTGAATTGTCTATATGTCCAGGATGGTCTTGCTATTGTCTGAGCAGTGATGCCTGTGACTGTAAATCTTCCCTCAGGGCTCATCATGAGATTCCAATGACATTAGCCCATCAGTGATTCTGCCAagtcacacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacag

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1346913 True 937 lncRNA 0.40 3 46810424 46906931

Neighbor


gene id symbol gene type direction distance location
LOC118938312 NA coding downstream 249339 46553952 ~ 46561085 (-)
LOC110486586 ubald2 coding downstream 274711 46510585 ~ 46535713 (-)
LOC110486583 srsf2 coding downstream 322542 46484771 ~ 46487882 (-)
LOC110486581 jmjd6 coding downstream 327561 46472494 ~ 46482863 (-)
LOC110486579 NA coding downstream 342081 46440996 ~ 46468343 (-)
LOC110485195 LOC102192139 coding upstream 22572 46929363 ~ 47345934 (-)
LOC110486593 LOC106606954 coding upstream 525475 47432406 ~ 47433949 (-)
LOC110486594 LOC106601485 coding upstream 553505 47460436 ~ 47466735 (-)
LOC110486596 LOC106606950 coding upstream 601993 47508924 ~ 47522717 (-)
LOC110486597 LOC106606951 coding upstream 658326 47565257 ~ 47597295 (-)
G1180729 NA non-coding downstream 66341 46677560 ~ 46744083 (-)
G1180645 NA non-coding downstream 210345 46581762 ~ 46600079 (-)
G1180622 LOC106606962 non-coding downstream 266356 46543120 ~ 46544068 (-)
G1180621 NA non-coding downstream 268010 46542214 ~ 46542414 (-)
G1180610 NA non-coding downstream 287802 46519406 ~ 46522622 (-)
G1181243 NA non-coding upstream 171703 47078634 ~ 47078983 (-)
G1181305 NA non-coding upstream 257611 47164542 ~ 47165117 (-)
G1181473 NA non-coding upstream 467012 47373943 ~ 47374514 (-)
G1181492 NA non-coding upstream 479173 47386104 ~ 47386413 (-)
G1179621 LOC106607015 other downstream 1277762 45531858 ~ 45532662 (-)
G1179619 LOC106601391 other downstream 1280310 45529436 ~ 45530114 (-)
zgc:171844 LOC106607059 other downstream 1617119 45182660 ~ 45193315 (-)
il-8 il-8 other downstream 1723294 45085269 ~ 45087130 (-)
LOC110486618 LOC106606909 other upstream 1096100 47999581 ~ 48015951 (-)
G1183013 NA other upstream 1118170 48025101 ~ 48025776 (-)
G1183126 NA other upstream 1352593 48259524 ~ 48259989 (-)

Expression



Co-expression Network