Gene
RNA
| Item | Value |
|---|---|
| gene id | G1180779 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 46815835 ~ 46819263 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1346601 | False | 586 | lncRNA | 0.43 | 4 | 46815835 | 46819263 |
| TU1346604 | True | 382 | lncRNA | 0.43 | 3 | 46815835 | 46818750 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110486589 | LOC106606959 | coding | upstream | 143488 | 46571242 ~ 46672347 (+) |
| LOC110486588 | LOC106602603 | coding | upstream | 250163 | 46559808 ~ 46565672 (+) |
| foxj1a | LOC106601528 | coding | upstream | 267922 | 46542192 ~ 46547913 (+) |
| LOC110486584 | LOC106606957 | coding | upstream | 306594 | 46493946 ~ 46509241 (+) |
| LOC110486580 | mfs11 | coding | upstream | 322103 | 46488100 ~ 46493732 (+) |
| LOC110486591 | LOC106606947 | coding | downstream | 576067 | 47395330 ~ 47400760 (+) |
| LOC110486592 | LOC106606958 | coding | downstream | 584511 | 47403774 ~ 47410322 (+) |
| tmem100a | LOC106606948 | coding | downstream | 648749 | 47468012 ~ 47471205 (+) |
| LOC110486595 | paqrb | coding | downstream | 662975 | 47482238 ~ 47505989 (+) |
| LOC110486605 | tmem220 | coding | downstream | 1011658 | 47830848 ~ 47832931 (+) |
| G1180758 | NA | non-coding | upstream | 2697 | 46761732 ~ 46813138 (+) |
| G1180743 | NA | non-coding | upstream | 60984 | 46747266 ~ 46754851 (+) |
| G1180716 | NA | non-coding | upstream | 102718 | 46678134 ~ 46713117 (+) |
| G1180211 | NA | non-coding | upstream | 276704 | 46538779 ~ 46539131 (+) |
| G1180844 | NA | non-coding | downstream | 108919 | 46928182 ~ 46928398 (+) |
| G1180845 | NA | non-coding | downstream | 110261 | 46929524 ~ 46932162 (+) |
| G1181474 | NA | non-coding | downstream | 555512 | 47374775 ~ 47375077 (+) |
| G1181480 | NA | non-coding | downstream | 560537 | 47379800 ~ 47380035 (+) |
| LOC110485193 | LOC106601421 | other | upstream | 479557 | 46302751 ~ 46336386 (+) |
| G1180047 | NA | other | upstream | 542234 | 46239144 ~ 46273601 (+) |
| LOC118936304 | LOC106601427 | other | upstream | 639273 | 46173911 ~ 46176562 (+) |
| LOC110485192 | LOC106601391 | other | upstream | 1285707 | 45529398 ~ 45554103 (+) |
| G1179362 | NA | other | upstream | 1352892 | 45462588 ~ 45462943 (+) |
| G1181472 | NA | other | downstream | 554900 | 47374163 ~ 47374477 (+) |
| G1181636 | NA | other | downstream | 730016 | 47549279 ~ 47549548 (+) |
| G1181955 | NA | other | downstream | 923098 | 47742361 ~ 47743064 (+) |
| G1182153 | NA | other | downstream | 1300350 | 48119613 ~ 48122575 (+) |
