G1181552 (LOC106580481)


Basic Information

Item Value
gene id G1181552
gene name LOC106580481
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 47432395 ~ 47433957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1347399
TTATTTCAGTGACATTTTATTATATGAATATAAAGAATAAATAGCAGTTCTCTTAATTTACATGATAAATCGTTGAAATAGGCTACCGATATTCAGCTGTATATCAGCTGCAAGATAACATAATCCACATGAAATCTGAGGTCGATAGATTAGTTTTCCATAATAGAAAACAACATGTTTATAAAACGGCACCTATGCGCCATTGATCTTCAATATAAATACAACAAATATAACCAATACTTTCCACAAATACGGTAGACTCTGGTTACACGTAATACTGACTTTTTACAATAACCTATATAATTGAATAGCACCTCATATACATAAAATACATTCCTACACTCGGTAGTGCATACAAAATTACAAAGTCATGATAATTTATACTTGAAAACAGTCATTTCAGTTCGAGCAGGCGCATTTGCATTCGGTTATCATCGGGTATTGAACTGGTATCCAAGTACATTTGAGGCCACCTTTCTTCTGTATACATCGCCATCTCAATATCGTAAAATGGGTCGAGTTTGCTGGTTTGCAGACCATCCCCTCTGGAACCGAACATGATCTTTTGCTTTGACAGTTTCCCACTCTCACATAACGTGGCCAAAATCTGCTGCCGAGGTCGTTCCATGTATAAATGACGGGACAGAACGAGAATGACCACAGCCACTGCTGCAGCCTCCGTTTAAGTTTGTTATTGGGTTTGTGCTTCTTGCCAAACTGTACGTCAAAATCCATTGCTTTGATTTCATTCGGCATCACTCCACTGGGCTTCTGTTGAATGTCCAAATCGTCAAGCTCATCGTTGCCAATGTATTTATCCTGTGGTGGTGTAATAGACATCAAGCGACTATCAAAGTCCCCCAATACACTTTTCAGTTCGGTTTCATTGAGGTCCCTCTCTTTTGGGTCAAAGACAGGATCTGGGTCCTCTTTTAATTCCACAAGTGGCAAACTGTCACTCGGGATAGGACGGAGGAGGTAATAATGCTGGCATAGCCCTTCTTCTATTATAAGTCCAAGGGACAACATCAGCAAGTACATTGCTACAAAATGCTGTGATTGATCCATGTCCGTTACGCACAATAAGACAGTATTATAGGATACAGCTAAACAGGTAGGCCTAGGCTACTCTGCTGCGTACAGTTGTGCCCGGTTCTTGCGGAGTGCGCACCGGCTTGAGTTACATCCAGCCAAACTTCACTTCTTGAGTGTTGGTGTCCTTAAAAGTCAGACTGCTTACTCCATAGCAAACGATACTTGATTGAAGATGGTAAAGATGAATAGTCTATTTCGTAAAAACAAATCTAGATATAGGCAGTGATTCCCTTTTACGCACGAATTCAATATATTGTATGAAATGGCTTTGTGACAGCATCAGTGGCATCAGCGGTTCTCATTCTTGTGCGCTTTGACGCGTGATTCCAGTTGCAAGTCCTCCCCTCTGAGGATCGGCATGGTGTTTCGTTTTCTTTTGCAGGACGCTGAGAGAGTAACCTGCTCCCTCTGATATATCCTCCACGGGTTGTGATGTAATTGATATATCCATCTGAATGTGGGTTTGTT

Function

NR:

description
noggin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1347399 True 1563 lncRNA 0.41 1 47432395 47433957

Neighbor

gene id symbol gene type direction distance location
LOC110486592 LOC106606958 coding upstream 22073 47403774 ~ 47410322 (+)
LOC110486591 LOC106606947 coding upstream 31635 47395330 ~ 47400760 (+)
LOC118938083 NA coding upstream 609417 46818538 ~ 46822978 (+)
LOC118938555 NA coding upstream 615396 46816007 ~ 46816999 (+)
LOC110486589 LOC106606959 coding upstream 760048 46571242 ~ 46672347 (+)
tmem100a LOC106606948 coding downstream 34055 47468012 ~ 47471205 (+)
LOC110486595 paqrb coding downstream 48281 47482238 ~ 47505989 (+)
LOC110486605 tmem220 coding downstream 396964 47830848 ~ 47832931 (+)
LOC110486603 LOC106606941 coding downstream 399277 47833234 ~ 47836337 (+)
LOC110485199 NA coding downstream 413455 47847412 ~ 47858242 (+)
G1181547 NA non-coding upstream 1857 47430302 ~ 47430538 (+)
G1181539 NA non-coding upstream 6095 47425987 ~ 47426300 (+)
G1181480 NA non-coding upstream 52360 47379800 ~ 47380035 (+)
G1181474 NA non-coding upstream 57318 47374775 ~ 47375077 (+)
G1181569 NA non-coding downstream 9434 47443391 ~ 47443708 (+)
G1181572 NA non-coding downstream 11597 47445554 ~ 47445922 (+)
G1181579 NA non-coding downstream 13035 47446992 ~ 47447613 (+)
G1181586 NA non-coding downstream 24236 47458193 ~ 47458412 (+)
G1181587 NA non-coding downstream 24506 47458463 ~ 47458695 (+)
G1181472 NA other upstream 57918 47374163 ~ 47374477 (+)
LOC110485193 LOC106601421 other upstream 1096117 46302751 ~ 46336386 (+)
G1180047 NA other upstream 1158794 46239144 ~ 46273601 (+)
LOC118936304 LOC106601427 other upstream 1255833 46173911 ~ 46176562 (+)
LOC110485192 LOC106601391 other upstream 1902267 45529398 ~ 45554103 (+)
G1181636 NA other downstream 115322 47549279 ~ 47549548 (+)
G1181955 NA other downstream 308404 47742361 ~ 47743064 (+)
G1182153 NA other downstream 685656 48119613 ~ 48122575 (+)
G1182354 LOC106601550 other downstream 1122057 48556014 ~ 48561624 (+)

Expression


Co-expression Network