G1181927


Basic Information

Item Value
gene id G1181927
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 47724824 ~ 47725173 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1347876
tgcagatctcctctagaacaatgatgttttggggctgttgctgggaaacacggactttcaactccctccaaagattttctatggggttgagatctggagactgactaggccacgacaggaccttgaaatgcttcttacgaagccactccttcgttgcccaggcggtgtgtttgggatcattgtcatgctgaaagacccagccacgtttcatcttcagtgcccttgctgatggaaggaggttttcactcaaaatctcacgatacatggccccattcgttctttcctttacacggatcagtcgtcctgatccctttgcagaaaaacaaccccaaagcatgatgtttccaccc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1347876 True 350 lncRNA 0.49 1 47724824 47725173

Neighbor

gene id symbol gene type direction distance location
LOC110486595 paqrb coding upstream 218835 47482238 ~ 47505989 (+)
tmem100a LOC106606948 coding upstream 253619 47468012 ~ 47471205 (+)
LOC110486592 LOC106606958 coding upstream 314502 47403774 ~ 47410322 (+)
LOC110486591 LOC106606947 coding upstream 324064 47395330 ~ 47400760 (+)
LOC118938083 NA coding upstream 901846 46818538 ~ 46822978 (+)
LOC110486605 tmem220 coding downstream 105748 47830848 ~ 47832931 (+)
LOC110486603 LOC106606941 coding downstream 108061 47833234 ~ 47836337 (+)
LOC110485199 NA coding downstream 122239 47847412 ~ 47858242 (+)
LOC110486607 LOC106601502 coding downstream 150233 47875406 ~ 47912448 (+)
LOC110486609 LOC106601450 coding downstream 201874 47927047 ~ 47932749 (+)
G1181774 NA non-coding upstream 21657 47601655 ~ 47703167 (+)
G1181660 NA non-coding upstream 126588 47598070 ~ 47598236 (+)
G1181650 NA non-coding upstream 157708 47565031 ~ 47567116 (+)
G1181645 NA non-coding upstream 166971 47557654 ~ 47557853 (+)
G1181628 NA non-coding upstream 185076 47539427 ~ 47539748 (+)
G1181941 NA non-coding downstream 6957 47732130 ~ 47732387 (+)
G1182094 LOC106601460 non-coding downstream 274425 47999598 ~ 48003504 (+)
G1182107 NA non-coding downstream 300011 48025184 ~ 48025774 (+)
G1182110 NA non-coding downstream 307005 48032178 ~ 48032404 (+)
G1181636 NA other upstream 175276 47549279 ~ 47549548 (+)
G1181472 NA other upstream 350347 47374163 ~ 47374477 (+)
LOC110485193 LOC106601421 other upstream 1388546 46302751 ~ 46336386 (+)
G1180047 NA other upstream 1451223 46239144 ~ 46273601 (+)
G1181955 NA other downstream 17188 47742361 ~ 47743064 (+)
G1182153 NA other downstream 394440 48119613 ~ 48122575 (+)
G1182354 LOC106601550 other downstream 830841 48556014 ~ 48561624 (+)
G1182541 NA other downstream 1221576 48946749 ~ 48947969 (+)
G1182555 NA other downstream 1252827 48978000 ~ 48981403 (+)

Expression


Co-expression Network