G1182993


Basic Information

Item Value
gene id G1182993
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 47962292 ~ 47962810 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1349093
ATCCTATCTTTTTAGGGAATGTCCTTTGTAGGATTAGCCAGTGACCGTTCGTGATTCAGTGTTCTTATAGTGGTGATATGCTGCATTTACAAAATGTGTGAACAGATTTAGTATGTCCATGCAACAGGCCATAAATAAGAGGCAGGGATAATCTTGTTGACATGGAAAAGAGAAGATAAACTGCTCTTTGTGCTCTTTTTGAGATGTCCCCAAAGACTGGAATGTTCTGAATCTCTGCCAGTTACTCAACTTGCTCAACCTTTTGTCAGGGAGTTTTGTTTCTTGTGTTATGAGTGCTTCTCAACATGAGATAATTCTTTCCTCAAAAATTCCAACTTGGATACTTTATACGTAACCTTCACACCTGAGTCAGATGCTTTAAAACAGGAGCTTACTTAGCTGAGGTTCATTGACCAATGGCTCTAAATATGCAAGACACACAGAGATGGGCACAAAATATGCCCATCTGTCATCCCTGTCATCAACATTCAGAAAAGTAATAGCCAAAGTATTAAAACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1349093 True 519 lncRNA 0.39 1 47962292 47962810

Neighbor

gene id symbol gene type direction distance location
LOC110486613 LOC106601452 coding downstream 8238 47948324 ~ 47954054 (-)
LOC110486611 LOC106601455 coding downstream 14156 47945361 ~ 47948136 (-)
LOC110486608 LOC106601451 coding downstream 27953 47933041 ~ 47934339 (-)
LOC110486610 reco coding downstream 40522 47919564 ~ 47921770 (-)
LOC110486606 LOC105899468 coding downstream 90438 47860198 ~ 47871854 (-)
LOC110486618 LOC106606909 coding upstream 36771 47999581 ~ 48015951 (-)
LOC110486619 LOC106606937 coding upstream 78860 48041670 ~ 48072432 (-)
LOC110486622 LOC106601465 coding upstream 146647 48109457 ~ 48118413 (-)
LOC110486627 apol3 coding upstream 247943 48210753 ~ 48215730 (-)
LOC118938313 apol3 coding upstream 258348 48221158 ~ 48224723 (-)
G1182992 NA non-coding downstream 21 47961927 ~ 47962271 (-)
G1182954 NA non-coding downstream 71492 47890593 ~ 47890800 (-)
G1181978 NA non-coding downstream 204645 47757427 ~ 47757647 (-)
G1181977 NA non-coding downstream 205425 47756640 ~ 47756867 (-)
G1181974 NA non-coding downstream 207757 47754242 ~ 47754535 (-)
G1182996 NA non-coding upstream 5386 47968196 ~ 47969726 (-)
G1182997 NA non-coding upstream 6999 47969809 ~ 47970255 (-)
G1183001 NA non-coding upstream 25903 47988713 ~ 47991990 (-)
G1183020 NA non-coding upstream 71175 48033985 ~ 48034365 (-)
G1183021 NA non-coding upstream 72675 48035485 ~ 48035728 (-)
LOC110486594 LOC106601485 other downstream 495606 47460436 ~ 47466735 (-)
LOC110486593 LOC106606954 other downstream 528895 47432406 ~ 47433949 (-)
LOC110486590 LOC105022923 other downstream 1047274 46827752 ~ 46915018 (-)
LOC110486586 ubald2 other downstream 1426647 46510585 ~ 46535713 (-)
G1179621 LOC106607015 other downstream 2429630 45531858 ~ 45532662 (-)
G1183013 NA other upstream 62291 48025101 ~ 48025776 (-)
G1183126 NA other upstream 296714 48259524 ~ 48259989 (-)
G1183190 NA other upstream 398788 48361598 ~ 48365100 (-)
G1183192 NA other upstream 401246 48364056 ~ 48376966 (-)

Expression


Co-expression Network