G1183001


Basic Information

Item Value
gene id G1183001
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 47988713 ~ 47991990 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1349103
CGATTTTATTCAAACAGGTGACAAAAAGGCAACAGTTACAAGCTGTTACAGACAATTAATTCCATGTGTCAGCCATCTCTTCCTCACACATATGTAAGACTGGAACACCCATACATTTCCTTAATGGACTGCATTAACAGAACCCAGTATAAAATCATAATCTCTGGAGCCAATGATATCAGGTCAAATTCAAAATCACttcacactgggcacagacgtcaatgcAACGTCTATTCCACAGTGGTTCAACgtaattgaaatgacgtggaaacaacgttgattcaaccagtgtgtgcccagtgggttgaatGTACCAACCTTTGCAAACTTTGTGCAAAACAGACATTGTACCTTTTCCTCATTGAGCAGCACTACCACCATGTCAGCTGAACATTACATAAATAAATATGCACAACATGATTAAATCATAAATAGAAAATAAATATGCCTTTATGACTGAATTTAGATAGGCAGCCAAATTCTGATatttcttttaactaaaatggtcttttgaccaatcagatctgaACTAGATCTGATGCGAAAAGATCTGaagtgattggtcaaaagaccaattagtgggaaaaatatctgaattgggctgcctgtgtaagcGCAGCCACAGAAGCCTTTCTGGAGATCCATCACTTCCTCTGTTGCCCTTTAGTTCCGAATGATTACCAAAGCATACCACCAGGATAATCTGAGATGCAAAAATCCTTATAGTAACGTACAGAAATCTGAATTTCAAAGTAGCAATCTTGCAAAACAAGTCATATTATCAGGGGAGTGACTGGTTGGCCTTTCAATCACTGTTAATTAGGATGAATACTGAACTCAACTATTGTCCTCTCAAGGTTCCTATTAAATAAAGGTTCCTATCAAATAAGGAAACAATAGCAAGTCTGTCACACATTGTGAACACAAAAACATGTCAATCGTCAATTCAGTATTAAAAGGTAAAAAGACCAACATAGATATAAAACttaaacaaaataaaacattttggtcTTTCAACAAAGCAAACAGCACAACAAAACCTGGCAACACAACTCTCAAGCTTCCACAGTGGAGATGGGCCAAAAAGACTACGGCCATCTGCAGGCAGACACACAATAAGAGCATTTGGCTTCACTGGTACAATCAATTCAGAATCATTAATAATACTAAAGTAACATGGACTCAATGTAAACATTCAAGAgataaaagaaaacatgaatagAATGTTGCAGTTCTTCCACAGCCTCTTCTCTGGGGTGAAGGAGAGTATCTATCCGATGCTTCCATGGTGTCCAATTCCTTCTCTCCTGTCATCTGTTTTCTGGCATGTTCACACCTCTGAATGATTTATTCTGGAAAGGACAAAAGTGCAATATTTCAGAAACACTGCGCTAATAGCCTAGATCTCAGATCAAAAAGTAATGATCTTTAGGCAACCCTATATTTtaagggtccataataaaccattTATAAGGCATTTACAAACAGTTTGCTcaccatttattaatcattacaCCTACATTTGTAAATGTTAG

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1349103 True 1535 lncRNA 0.37 2 47988713 47991990

Neighbor

gene id symbol gene type direction distance location
LOC110486613 LOC106601452 coding downstream 34659 47948324 ~ 47954054 (-)
LOC110486611 LOC106601455 coding downstream 40577 47945361 ~ 47948136 (-)
LOC110486608 LOC106601451 coding downstream 54374 47933041 ~ 47934339 (-)
LOC110486610 reco coding downstream 66943 47919564 ~ 47921770 (-)
LOC110486606 LOC105899468 coding downstream 116859 47860198 ~ 47871854 (-)
LOC110486618 LOC106606909 coding upstream 7591 47999581 ~ 48015951 (-)
LOC110486619 LOC106606937 coding upstream 49680 48041670 ~ 48072432 (-)
LOC110486622 LOC106601465 coding upstream 117467 48109457 ~ 48118413 (-)
LOC110486627 apol3 coding upstream 218763 48210753 ~ 48215730 (-)
LOC118938313 apol3 coding upstream 229168 48221158 ~ 48224723 (-)
G1182997 NA non-coding downstream 18458 47969809 ~ 47970255 (-)
G1182996 NA non-coding downstream 18987 47968196 ~ 47969726 (-)
G1182993 NA non-coding downstream 25903 47962292 ~ 47962810 (-)
G1182992 NA non-coding downstream 26442 47961927 ~ 47962271 (-)
G1182954 NA non-coding downstream 97913 47890593 ~ 47890800 (-)
G1183020 NA non-coding upstream 41995 48033985 ~ 48034365 (-)
G1183021 NA non-coding upstream 43495 48035485 ~ 48035728 (-)
G1183047 NA non-coding upstream 127381 48119371 ~ 48136180 (-)
G1183089 NA non-coding upstream 197678 48189668 ~ 48189893 (-)
G1183098 LOC106606913 non-coding upstream 206212 48198202 ~ 48204974 (-)
LOC110486594 LOC106601485 other downstream 522027 47460436 ~ 47466735 (-)
LOC110486593 LOC106606954 other downstream 555316 47432406 ~ 47433949 (-)
LOC110486590 LOC105022923 other downstream 1073695 46827752 ~ 46915018 (-)
LOC110486586 ubald2 other downstream 1453068 46510585 ~ 46535713 (-)
G1179621 LOC106607015 other downstream 2456051 45531858 ~ 45532662 (-)
G1183013 NA other upstream 33111 48025101 ~ 48025776 (-)
G1183126 NA other upstream 267534 48259524 ~ 48259989 (-)
G1183190 NA other upstream 369608 48361598 ~ 48365100 (-)
G1183192 NA other upstream 372066 48364056 ~ 48376966 (-)

Expression


Co-expression Network