G1183098 (LOC106606913)


Basic Information

Item Value
gene id G1183098
gene name LOC106606913
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48198202 ~ 48204974 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1349213
CAACAATATATACACTTCACAGATGAGCAGAATAGGAATCCTCATTATGACTCATTTTGATGACTCATGCCTGCTTAGTGATTATTTTTCAGTAAGAAAATAATGATCTCTCCTTTCAGTAggagaaaatacaaaataaatggaaACAAGAGCCAGTTTCTCAGATCTTTATTTGAATGTAACGAGGAAGTATTTTCTGTGTGATGCAGGCCACCTGGTAACTAGTGCAATTGCCACACCTTAGGGTTCTTGTTCATcttcctcctcctcatcctcttcatcatcatcatcatcttcttccTCATCTTCATCTGAGCTGAAGGTTCCGTCAGGCAAGCTATACACGCGAATCACTTGCTTGTTGGGGTCCTTGAGGATGAGGTACTTGCCCTCCTCCAGCTTGCGGCAGATGTCGATGACGCAGCGTAGGATGCCCCAGGCGTTCTCCATGCTCAAGTTGATCTGGCTGGCAAACTCAGTGGGCTGGAACTGCTGGGTGCCCAGGACCACGTGGCGCGCAGAGTCCTTCGCGTGATAACGAGACACGTACCTAGCTTGAGGTACTCTGAGCCAGCCAGCATGGCACAGCAGGTCCAGCGGGCCAGTTTGTAGCTGTTGTTCTTCAGCTCGGTGGccagaacagctcccctctgaGAGTCCAGCTTCTGACGCCAGTCCACTCCATTACAGTGCCGGGAGTCCCACTCGTTGAGGGTCTTGACGTTGATGAAGGACACCTCTCCGTTGGCCCCGGTCATCACTCCATCGTGCTCACAGCGTACAATCAGGTCAATGTCCTCCCCCAGCTTCCAGCGGCGGTACCTGTAGGCAACAGAGGCCACCTCACTCTTGTCTATGTCCTCCTCTACAAatgggttggggttagggaaCTTGTGCCTCTCCCCGCCCATGCGCAGACACTGCTGGCTGAAGTTATGGTTGATGTAGGTAGCCTCCATGGCCAGGTTACGGGGCGAGTTGAAGGAGTTGCCCTCATCCTGTGGTGGCTCGTTGGCAGTCTCACTCACCGTCAACAGATCAAATCAGAGTTGTCTCTCTTGTCAAAGAAGAGCTTGTTGCCCACTCTCTGCACGATAATGTCCCAGGAGTTGACTGAGCGCGTGCAGCACATCAGGGTGGCCAGGATGGCATCGGTGGCAAACACATTGCCCTGGGTCTTAGCCAACTTGCGGATGACAGGGTCGTcggtggtggtgactgtgtgaaAGATCCTCTTGATGCTCTTGAGAGGCTTCTCGTTGCGAGTGGTGACACGGTCGAAGGCCTTGTCGTAGTACTCCAACGCACCACAGCACTCAATGTCAGTGGGGTCCTCCACCTCCATGTATCTCATCTTCATCAGCCTGGGGAAGTCCATCTCCTCCTTCACCTCCCAGTCACTCCGGACCTCCACCGACGAGTCTCTGGGTTTCAACTGGGATTTCTGGTCCCACTTCTGACGGAcgccaaactgcttctggaactTTTTCTGTAGGCGCATGCGATCCCTCTCCTTCTGCTTGGCACTCTTCGGGAGGGTCTGCATATTGAACTGGGTCAGGTTCCTGCGGTCCTTGTCCCTGCGCAGATTCCTCTGTGCAAACCTCATGCGGTTCCTCTGGTAGGCAGTCTTCTGCGTCTTGGCAGTGTCCACCAGCTGGAAGCTCGTCTCGTCCTCCTCATGGAAGTAGGCATACTGACTACCACCCCCAAACTGAGATGAATACTTGTTTGTGTATCTCTTGTCCTGGTAGGTTGCTCCTGTCCAATCAGCCACCTTTCCCAGACGGTCTCCTTTGCTAAAGGGCTGGTAGGGCATGTCCTTAAACTTCTCAGGGACAGCACAGGGACCCCATCCAGAGGGATTGTCCTGGATCTCAGGGGCATGGAACTTCGCCATGGTCTGAGGTTAGGGCAGATGTTGTAAACATTTAAAATGAAACGCAGATTTGAACAATATCTAGTTACCTTATACTATGTATATTAGATAGACATTTGATGTATATACGCAAGTGGATGATAAGATTAGTAACCTAGGCCGCAGGGTCTCAGACAATGAACAGCACTGTTTTCACTCAGCAATGCACTAACATTAGATAGGCATTTCAGTTTGCGCAGTGGCCTAGTCATCACGGACCCAGGACACATAACTCTTGGATTAGTAAGAAACTGCCATCGATAGACTATTTGAATATTGGATTCTCTGCATGAT
>TU1349212
CAACAATATATACACTTCACAGATGAGCAGAATAGGAATCCTCATTATGACTCATTTTGATGACTCATGCCTGCTTAGTGATTATTTTTCAGTAAGAAAATAATGATCTCTCCTTTCAGTAggagaaaatacaaaataaatggaaACAAGAGCCAGTTTCTCAGATCTTTATTTGAATGTAACGAGGAAGTATTTTCTGTGTGATGCAGGCCACCTGGTAACTAGTGCAATTGCCACACCTTAGGGTTCTTGTTCATCTtcctcctcatcctcttcatcatcatcatcatcttcttccTCATCTTCATCTGAGCTGAAGGTTCCGTCAGGCAAGCTATACACGCGAATCACTTGCTGTTGGCaaaagcacacaaacacaatgataTTGACTCTCTGTAAGGAACACTAACATTTCTAGGGCTCTGTGTGCAGACACTGTCAGACAATGGGGGAAATCAACTACTACAAGTTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1349213 False 2212 lncRNA 0.51 15 48198202 48204974
TU1349212 True 474 lncRNA 0.40 2 48202609 48204974

Neighbor

gene id symbol gene type direction distance location
LOC110486622 LOC106601465 coding downstream 79789 48109457 ~ 48118413 (-)
LOC110486619 LOC106606937 coding downstream 125770 48041670 ~ 48072432 (-)
LOC110486618 LOC106606909 coding downstream 182253 47999581 ~ 48015951 (-)
LOC110486613 LOC106601452 coding downstream 244148 47948324 ~ 47954054 (-)
LOC110486611 LOC106601455 coding downstream 250066 47945361 ~ 47948136 (-)
LOC110486627 apol3 coding upstream 5779 48210753 ~ 48215730 (-)
LOC118938313 apol3 coding upstream 16184 48221158 ~ 48224723 (-)
LOC118936490 LOC106601559 coding upstream 44956 48249930 ~ 48252505 (-)
LOC110486633 rl3 coding upstream 216677 48421651 ~ 48426322 (-)
LOC118938618 NA coding upstream 216893 48421867 ~ 48421998 (-)
G1183089 NA non-coding downstream 8309 48189668 ~ 48189893 (-)
G1183047 NA non-coding downstream 62022 48119371 ~ 48136180 (-)
G1183021 NA non-coding downstream 162474 48035485 ~ 48035728 (-)
G1183020 NA non-coding downstream 163837 48033985 ~ 48034365 (-)
G1183001 NA non-coding downstream 206212 47988713 ~ 47991990 (-)
G1183104 NA non-coding upstream 3292 48208266 ~ 48210022 (-)
G1183122 NA non-coding upstream 50476 48255450 ~ 48255662 (-)
G1183135 NA non-coding upstream 65751 48270725 ~ 48271035 (-)
G1183142 cacng2 non-coding upstream 75046 48280020 ~ 48281903 (-)
G1183190 NA non-coding upstream 156624 48361598 ~ 48365100 (-)
G1183013 NA other downstream 172426 48025101 ~ 48025776 (-)
LOC110486594 LOC106601485 other downstream 731516 47460436 ~ 47466735 (-)
LOC110486593 LOC106606954 other downstream 764805 47432406 ~ 47433949 (-)
LOC110486590 LOC105022923 other downstream 1283184 46827752 ~ 46915018 (-)
G1183126 NA other upstream 54550 48259524 ~ 48259989 (-)
G1183192 NA other upstream 159082 48364056 ~ 48376966 (-)
G1183196 NA other upstream 174293 48379267 ~ 48389718 (-)
G1183225 NA other upstream 230852 48435826 ~ 48470983 (-)

Expression


Co-expression Network