G1183190


Basic Information

Item Value
gene id G1183190
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48361598 ~ 48365100 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1349323
ctcttcatgtgtcatgctggatagagagaccactatatttctccctcttcatgagtcatgctggacagagaccactatattacccCTCCTTCATgtgtcatgctggacagagaccattatattactccctcttcatgagtcatgctggacagagaccactatatttcTCCCTCTTCATgtgtcatgctggacagagaccattatattactccctcttcatgagccatgctggacagagaccactatatttcTCCCTCTTCGTGAgtcatgctggatagagaccactatattactccctcttcatgagccatgctggatagagaccactatattactctctCTTCGTGAGCCATGCTGGAcatagaccactatattactctctcttcatgagccatgctggacatagaccactatattactccctcttcatgagccatgctggacagagaccactatattactctctcttcatgagccatgctggatagagagaccactatattactccctcttcatgagccatgctggacagagaccattatattactccctcttcatgagccatgctggatagaaaccactatattactccctcttcatgagccatgctggacataaaccactatattactccctcttcatgagccatgctggacagagaccactatattactccctcttcatgagccatgctagacagagaccactatattactccctcttcgtgagccatgctggatagagaccactatattactccctcttcatgagtcatgctggacagagaccactatattactctctCTTcgtgagccatgctggatagagaccactatattactccctcttcatgagtcatgctggatagagaccactatattactctctCTTcgtgagccatgctggacagaaagaccactatattactacctcttcatgagtcatgctggatagaga
>TU1349324
ccactatattactccctcttcatgagccatgctggacatagaccactatattactctctCTTcgtgagccatgctggatagagaccactatattactccctcttcatgagccatgctagacagagaccactatattactccctcttcgtgagccatgctggatagagaccactatattactccctcttcatgagtcatgctggacagagaccactatattactctctCTTcgtgagccatgctggatagagaccactatattactccctcttcatgagtcatgctggatagagaccactatattactctctCTTcgtgagccatgctggacagaaagaccactatattactacctcttcatgagtcatgctggatagaga
>TU1349322
ctcttcatgtgtcatgctggatagagagaccactatatttctccctcttcatgagtcatgctggacagagaccactatattacccCTCCTTCATgtgtcatgctggacagagaccattatattactccctcttcatgagtcatgctggacagagaccactatatttcTCCCTCTTCATgtgtcatgctggacagagaccattatattactccctcttcatgagccatgctggacagagaccactatatttcTCCCTCTTCGTGAgtcatgctggatagagaccactatattactccctcttcatgagccatgctggatagagaccactatattactccctcttcatgagccatgctggatggagaccactatattactccc

Function

NR:

description
PREDICTED: putative proline-rich protein 21

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1349323 False 957 TUCP 0.45 7 48361598 48365100
TU1349324 False 380 lncRNA 0.45 2 48361598 48362019
TU1349322 True 381 TUCP 0.45 3 48364594 48365100

Neighbor

gene id symbol gene type direction distance location
LOC118936490 LOC106601559 coding downstream 109093 48249930 ~ 48252505 (-)
LOC118938313 apol3 coding downstream 136875 48221158 ~ 48224723 (-)
LOC110486627 apol3 coding downstream 145868 48210753 ~ 48215730 (-)
LOC110486622 LOC106601465 coding downstream 243185 48109457 ~ 48118413 (-)
LOC110486619 LOC106606937 coding downstream 289166 48041670 ~ 48072432 (-)
LOC110486633 rl3 coding upstream 59632 48421651 ~ 48426322 (-)
LOC118938618 NA coding upstream 59848 48421867 ~ 48421998 (-)
LOC118938629 NA coding upstream 60981 48423000 ~ 48423079 (-)
LOC118938627 NA coding upstream 62221 48424240 ~ 48424333 (-)
LOC110486638 rl3 coding upstream 82033 48444052 ~ 48448776 (-)
G1183142 cacng2 non-coding downstream 79695 48280020 ~ 48281903 (-)
G1183135 NA non-coding downstream 90563 48270725 ~ 48271035 (-)
G1183122 NA non-coding downstream 105936 48255450 ~ 48255662 (-)
G1183104 NA non-coding downstream 151576 48208266 ~ 48210022 (-)
G1183098 LOC106606913 non-coding downstream 156624 48198202 ~ 48204974 (-)
G1183194 NA non-coding upstream 6042 48368061 ~ 48430085 (-)
G1183195 NA non-coding upstream 11638 48373657 ~ 48381821 (-)
G1183217 NA non-coding upstream 66969 48428988 ~ 48431503 (-)
G1183212 NA non-coding upstream 125729 48487748 ~ 48488246 (-)
G1183223 rund1 non-coding upstream 128794 48490813 ~ 48493597 (-)
G1183126 NA other downstream 101609 48259524 ~ 48259989 (-)
G1183013 NA other downstream 335822 48025101 ~ 48025776 (-)
LOC110486618 LOC106606909 other downstream 345647 47999581 ~ 48015951 (-)
LOC110486594 LOC106601485 other downstream 894912 47460436 ~ 47466735 (-)
LOC110486593 LOC106606954 other downstream 928201 47432406 ~ 47433949 (-)
G1183192 NA other upstream 2037 48364056 ~ 48376966 (-)
G1183196 NA other upstream 17248 48379267 ~ 48389718 (-)
G1183225 NA other upstream 73807 48435826 ~ 48470983 (-)
G1183337 NA other upstream 305769 48667788 ~ 48668082 (-)
LOC110486656 syt3 other upstream 535660 48875671 ~ 48936482 (-)
LOC110485205 LOC106597701 other upstream 608083 48959315 ~ 49053966 (-)

Expression


Co-expression Network