G1182318


Basic Information

Item Value
gene id G1182318
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48464880 ~ 48467408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1348309
GGGCCTGCAGCCTTATCTTCACCACGTCCAGTGGTGTGactgtgaaagagagacagattcaATTATACTGATCTATTTACACCCATCATGGGTCTCATCAATGAGGAACACCTGCATACATGAGTGTGAGCGTATGCTTGTGTGAGGTGCAGTGTGTGAGTGGATCTGGGAAAATGGAATAGTGTTCTAGAACGGTGTCTTCTCTGAAAAAAATCTGTGGGGGGGGGCTGTTCCTACACACAAGGCTTGGACACTAGTTCCGCAGGCTTTGTAGTCTGGTCACACTAGCCAGATCTCAACCTGTACAACCAGACTGGAGTGGAGCTCAGATGGACACACAAAGTGAACCAGTGACAGCCTCTGATGCAGTTGTGGCAGACTCCTGTGTTGTCGTGGAGGCTTCGGTCACCCATGGAACATTTCATCCTAGTTCTACAGTTGCCATGGCACCTAGTGGCAGGCTAGGCAGAGAGCTCATGTAAATTATGTACATATTTAATAACATTTAATCATTTTTATAcatactttttttctttttttttttacaaacatttcATTTTTCAACAGCTAAAAGAGTGCATTTCAAGTCTTGATATCATGAATCGTAATCCTGCTCGTAACCTGATGAAAATCAGTGTGGTCAACAAGCTAGCTAATTCTGTAGAGACAGTATCTAATAAAGCTTTGTTACAATTGATTTCAGTAGGGTAAATCGATTCACTCTCCTTAAATATTtgtcatttgatttatttgtttCAGTCTCTGAATTGATTAATCTCACTTTTCGCCACCAGCTCCTGATATCAGGGTATAAAATCTATAATATGTCTCCTGAACTTGCCTGGGGCACATGCACACATGCGCACTAGGTCCGAGCTCATTTTCCCTGGCTAAACTAGCTGGCTACTGAACTATGCTAGTTTTTGTCCTCATTGCCAAACTTCAGAAATATTGCACCCTCAACTTCAAAACTCCTTTGCTACAATAGTTATAATTCATGACTGGTTTGTGAAATCTGTCGTAAGACGGTGGAGAAGGATATCATTGCTACTTAAAACGGACTCAACATCAGTTTTCAGATTCACCGGCGTCATTGGCATAGGGTTAGCTGGACGTTTCTGACTGGTCTTGGAACTGTGACATTAGCATAGGGTTAGCTGGACGTTTCTGACTGGTCTTGAAACTGTGACATTAGCATAGGGTTAGCTGGACGTTTCTGACTGGTCTTGGAACTGTGACATTAGCATAGGGTTAGCTGGACGTTTCTGACTGGTCTTGAAACTGTGACATTGGCATAGGGTTAGCTGGACGTTTGACTGGTCTTGGAACTGTGACAACAGGCAGCCTCTCCTCGCTAGGTGCGATGGGATATGTAGTGATTTTGCCAACACagccagatatgtacacaaGCATTGTACCTTTACCCTTTTTTTACACTATCGTTGATTAAATCAGACTTCTCTGGTACTATTTAGTGTTTACACTGTTCAAAATTGTAACCCTCCTATTTCTGGATCTCCTTATTGTTATCATTACTATTATTatgatcatcattataataataaaCAATGACATAGGCTTAGAatagcagccttgtataaccaccatcgagctgtaggcctaagaCCACATCCTGTGTACTGTAACTTTCTTAGGCCTATATTTCTATAGTTATATAGGCTACTGCATCAATCAATCATTAATTTGTTCGTGCCATCACACAGCATACGAGACATTcatgaaggccagcatcctggagtcgcctcattactgttgacattgagactggtgttttacaggcactatttaatgaagcggccagttgaggacttgaggcttCTGTGCCTAAGACACggtcacgcagatgagcagagaccctgggcatctttcttttggtgtttttccagagtcagtagaaaggcctctttagtgtcctaatttttcataactgtgaccttattaattgcctaccgtctgaaagctgttagtgtcttaacgactgttccacaggtgcatgttcattaattgtttatggttcatttaaCAAgattgggaaacagtgtttaaaccttttagaatgaagatctgtgaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1348309 True 2092 lncRNA 0.42 2 48464880 48467408

Neighbor

gene id symbol gene type direction distance location
LOC110485200 cacng2 coding upstream 104011 48279842 ~ 48360869 (+)
LOC110486626 LOC106606914 coding upstream 232943 48219979 ~ 48231937 (+)
LOC110486624 LOC106606913 coding upstream 260059 48197514 ~ 48204821 (+)
sstr3 LOC106601468 coding upstream 298014 48148399 ~ 48166866 (+)
rac2 LOC106601467 coding upstream 328561 48119316 ~ 48136319 (+)
LOC110486632 LOC106601556 coding downstream 8396 48475804 ~ 48486385 (+)
LOC110486639 rund1 coding downstream 21037 48488445 ~ 48493519 (+)
LOC110486640 LOC106601555 coding downstream 29205 48496613 ~ 48498675 (+)
ifi35 LOC106606925 coding downstream 33103 48500511 ~ 48506208 (+)
LOC110486644 LOC106601551 coding downstream 65102 48532510 ~ 48540487 (+)
G1182331 NA non-coding upstream 2726 48454291 ~ 48462154 (+)
G1182308 rl3 non-coding upstream 19270 48421330 ~ 48445610 (+)
G1182275 NA non-coding upstream 124780 48339706 ~ 48340100 (+)
G1182240 NA non-coding upstream 194053 48270610 ~ 48270827 (+)
G1182204 NA non-coding upstream 267850 48196808 ~ 48197030 (+)
G1182317 NA non-coding downstream 1970 48469378 ~ 48472671 (+)
G1182334 NA non-coding downstream 2795 48470203 ~ 48478610 (+)
G1182341 NA non-coding downstream 48676 48516084 ~ 48516283 (+)
G1182342 NA non-coding downstream 49173 48516581 ~ 48520449 (+)
G1182153 NA other upstream 342305 48119613 ~ 48122575 (+)
G1181955 NA other upstream 721816 47742361 ~ 47743064 (+)
G1181636 NA other upstream 915332 47549279 ~ 47549548 (+)
tmem100a LOC106606948 other upstream 994868 47468012 ~ 47471205 (+)
G1181472 NA other upstream 1090403 47374163 ~ 47374477 (+)
G1182354 LOC106601550 other downstream 88606 48556014 ~ 48561624 (+)
G1182541 NA other downstream 479341 48946749 ~ 48947969 (+)
G1182555 NA other downstream 510592 48978000 ~ 48981403 (+)
G1182595 NA other downstream 596377 49063785 ~ 49065142 (+)
G1182629 NA other downstream 647567 49114975 ~ 49118697 (+)

Expression


Co-expression Network