G1183222 (rpl27)


Basic Information

Item Value
gene id G1183222
gene name rpl27
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48496708 ~ 48498597 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1349363
CCCTGTCTTGTATCTCTCCTCAAACTTAATCTTGGCCTCCCGTCTGGCTTTGCGTTTCAGGGCAGGGTCTCTGAAGACATCCTTGTTGACGACAGTTTTGTCCAGAGGAATGTCCACAGAGTATCTGGTTGGCATGAGGTGATTGTAGTTGTACACCTTTACGAAGGCCTTGATCTTGGACCTCTTGGCAACCTTCTTCTTGCCCATGGTTGTGGTCACTTTGCGGGGGTAGCGGTCAATGCCCGAGACCAGTGCGTGGCTATAAGGGCGGTCTGAGGTGCCATCATCAATGTTCTTGACTATAACAGCTTTACGACCAGCGTAGCGCCCAGCAAGGACCATCACCACCTTCCCAGGTTTCATGAACTTGCCCATCTTGGTGCTATTCTGTGGA
>TU1349365
CCCTGTCTTGTATCTGTGgatagaaaaaaaaaacattttagaaaaggttTACAATGGAGACGAAAAAGCCTGCTATTTTATTATCCTATAGTAGTTAAGCTACTTGTATCATGTGTCAGATATTATCAGGACAAAGAACCTGTGCATTTCTCACAAGTCCTGGTTCCTGGTGTGGGAAAAGACTCACCTCTCCTCAAACTTAATCTTGGCCTCCCGTCTGGCTTTGCGTTTCAGGGCAGGGTCTCTGAAGACATCCTTGTTGACGACAGTTTTGTCCAGAGGAATGTCCACAGAGTATCTGATGGCATGAGGTGATTGTAGTTGTACACCTTTACGAAGGCCTTGATCTTGGACCTCTTGGCAACCTTCTTCTTGCCCATGGTTGTGGTCACTTTGCGGGGGTAGCGGTCAATGCCCGAGACCAGTGCGTGGCTATAAGGGCGGTCTGAGGTGCCATCATCAATGTTGACTATAACAGCTTTACGACCAGCGTAGCGCCCAGCAAGGACCATCACCACCTTCCCAGGTTTCATGAACTTGCCCATCTCTGGGTGATGGTGCTATTCTGTGGA
>TU1349366
CCCTGTCTTGTATCTGTGgatagaaaaaaaaaacattttagaaaaggttTACAATGGAGACGAAAAAGCCTGCTATTTTATTATCCTATAGTAGTTAAGCTACTTGTATCATGTGTCAGATATTATCAGGACAAAGAACCTGTGCATTTCTCACAAGTCCTGGTTCCTGGTGTGGGAAAAGACTCACCTCTCCTCAAACTTAATCTTGGCCTCCCGTCTGGCTTTGCGTTTCAGGGCAGGGTCTCTGAAGACATCCTTGTTGACGACAGTTTTGTCCAGAGGAATGTCCACAGAGTATGGTTGGCATGAGGTGATTGTAGTTGTACACCTTTACGAAGGCCTTGATCTTGGACCTCTTGGCAACCTTCTTCTTGCCCATGGTTGTGGTCACTTTGCGGGGGTAGCGGTCAATGCCCGAGACCAGTGCGTGGCTATAAGGGCGGTCTGAGGTGCCATCATCAATGTTCTGACTATAACAGCTTTACGACCAGCGTAGCGCCCAGCAAGGACCATCACCACCTTCCCAGGTTTCATGAACTTGCCCATCTCTGGGTGATGGTGCTATTCTGTGGA
>TU1349364
GCCACCTAAACAAACCATTACTCCCATGTCCACCTGGCACTGACCTGGTTGGCATGAGGTGATTGTAGTTGTACACCTTTACGAAGGCCTTGATCTTGGACCTCTTGGCAACCTTCTTCTTGCCCATGGTTGTGGTCACTTTGCGGGGGTAGCGGTCAATGCCCGAGACCAGTGCGTGGCTATAAGGGCGGTCTGAGGTGCCATCATCAATGTTCTGACTATAACAGCTTTACGACCAGCGTAGCGCCCAGCAAGGACCATCACCACCTTCCCAGGTTTCATGAACTTGCCCATCTCTGGGTGACAAGAGGAGTTATAAAAGAAAAGCACTATTACTAACACAAGACGCCATGGAATGATCAATGTGGGACAATATTTACTGCTTCTAGATATCAGTAGTATCTTTGTTATCTACGGAATACCGGTATGCTATTACCTAAACTAGCTACGTCAGCTTGGACGTCAGATGACCAA

Function

symbol description
rpl27 Predicted to be a structural constituent of ribosome. Acts upstream of or within erythrocyte differentiation. Predicted to be located in cytoplasmic side of rough endoplasmic reticulum membrane. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 16. Orthologous to human RPL27 (ribosomal protein L27).

NR:

description
60S ribosomal protein L27

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1349363 False 394 lncRNA 0.51 5 48496708 48498597
TU1349365 False 572 lncRNA 0.47 4 48496708 48498597
TU1349366 False 573 lncRNA 0.47 4 48496708 48498597
TU1349364 True 474 lncRNA 0.48 2 48497279 48497899

Neighbor

gene id symbol gene type direction distance location
LOC110486634 LOC106601558 coding downstream 20987 48451625 ~ 48475721 (-)
LOC110486638 rl3 coding downstream 47932 48444052 ~ 48448776 (-)
LOC110486641 bcat1 coding upstream 7666 48506263 ~ 48514910 (-)
LOC110486643 LOC106606926 coding upstream 23472 48522069 ~ 48529995 (-)
LOC110486646 LOC106601550 coding upstream 45582 48544179 ~ 48572065 (-)
LOC110485203 ppfia3 coding upstream 125209 48623806 ~ 48665589 (-)
LOC110486648 nucb1 coding upstream 171634 48670231 ~ 48683477 (-)
G1183223 rund1 non-coding downstream 3111 48490813 ~ 48493597 (-)
G1183212 NA non-coding downstream 8462 48487748 ~ 48488246 (-)
G1183217 NA non-coding downstream 65205 48428988 ~ 48431503 (-)
G1183194 NA non-coding downstream 66623 48368061 ~ 48430085 (-)
G1183195 NA non-coding downstream 114887 48373657 ~ 48381821 (-)
G1183224 NA non-coding upstream 18124 48516721 ~ 48519707 (-)
G1183318 LOC106601548 non-coding upstream 120404 48619001 ~ 48621604 (-)
G1183319 NA non-coding upstream 123614 48622211 ~ 48622756 (-)
G1183330 NA non-coding upstream 157754 48656351 ~ 48656752 (-)
G1183353 NA non-coding upstream 227005 48725602 ~ 48725877 (-)
G1183225 NA other downstream 25725 48435826 ~ 48470983 (-)
G1183196 NA other downstream 106990 48379267 ~ 48389718 (-)
G1183192 NA other downstream 119742 48364056 ~ 48376966 (-)
G1183190 NA other downstream 131608 48361598 ~ 48365100 (-)
G1183126 NA other downstream 236719 48259524 ~ 48259989 (-)
G1183337 NA other upstream 169191 48667788 ~ 48668082 (-)
LOC110486656 syt3 other upstream 399082 48875671 ~ 48936482 (-)
LOC110485205 LOC106597701 other upstream 474586 48959315 ~ 49053966 (-)
setd1a LOC106585476 other upstream 857781 49346540 ~ 49361234 (-)
LOC110486687 LOC106601611 other upstream 988329 49486817 ~ 49504819 (-)

Expression


Co-expression Network