G1183318 (LOC106601548)


Basic Information

Item Value
gene id G1183318
gene name LOC106601548
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48619001 ~ 48621604 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1349482
TATGGAATAAGAAACAGGCCTTTACAATATACATACATGTATTACAAAAAGCCAGATGTATAAATATGTTGTACTGCATATACTATAGAGTGCAGAGTTCAAACTGCAAACTGAGGCGAATGGAATTCTTCAATCATCTAATGATCTAACTACAGGCAGAGATAGAGATAAAAATGCTTCTGTGGTTGTCACACTGCTGCATGGTTTCTATTGGTCACTCAAATGTTCTGATCACATATGACTGGCTACACTGTAAATGGACTGTTGCTCTCATGACAACAATATGGGCATCATGATGACACCCAGCATTGTGCTCACAGTATACATGGCTCAATTCTCCTCTCTATCTtactattaaaccactcagtgataATGTTCTCTGTGAGACTTCACAAAGGAGGACTGGGGATGGTCAGTGCTCAGTATGGATTGTTGAGGAGTATCAGGCTAAATCACTAGGTGCTGCCAGTCCCTTCCTCTCCCATTCAGAGCAGAGGCCAGACGCCAGAGGCTGGAATCATGTAACAACAACAAACCTATCTTTCCACATACCTTTCTCTATAAATATACATACTTTCATACATAAAAGCATACTGATCACATATTGTACACATATATAAAGAAATATATTAATTTAAAACTCATGcttacatacagtattactcaGCAATAACATGTATGATATGAAACAATTGTGAAACAAACAGTACTTTTTTTAAATCACTGTTTTGATATGATAGTTTTCCCTAAGTTGTATTGTTGaggttttattgtttttgtgtagtCACTCTCACTGAGCCCGTGATGGGTGGAGGGGTTGTCTCGCCTACACTCTTtaaaaaaagtgctatctagaacctaagggttctttgtaagagtgcagcTATCATAAGAAGAATGCACtaatgtaagtcgctctggataagaggcaCCCTGGCCTATAAAGTAACACCTACTGTCTAATTGACATTACATCCAATGTTCCAAGCATTATCTGTGTTAACATTTCTTCCACATTATCCTCTCCACCTTTCCTCCATCTCCTGCCCTCACTCCCTTCCTCTGTTTTTCCTGGTTACTCTGGACAGTAGGACACACACGCAGGACGAGTTGATGCGGACCCACCTCCAGCCCTGCAGACCGTTGTTGTCAACAGTGAGGGCTCGGACATATGTGTCCTTGGCCTTACACTGACTCACCCACTGTCTGATGTCCACGCCCCGGCAGCTGGCCCCGGACACACCTACGGGTCCTGTCACTGTTCCTGCTGCCGAGGCCCCTGCCCCCCCTGCCTCCCGCTGCGGCCCACCGCCCCTCTGCTGCCCCTCCTGGCGGCAGCGAGTCTCATAGAAGTACTGCTTCAGCGCCCCCTTGACTGTCTTGATCTCTGGCACGATGTTGACTGTTTTACCCCTATCGTCGAATACCGTCGTCTTGTCCGTTACCCACACGCTCTCCGACTCACACACCGGCATCTCACCCCGCCCGGTGTGGGGCAAGTGTGAGCGCTTGTGCCTGGGGGCGGGGCGAGGGGGCTCCCTGGCCCCCCTTAGAGTGTCCACCCAGCTCAGCGGCACACTCCCGTCCATCTCTCGGTCCCCATGACCCTCCATGTGTCCGTCTGCGTCcgacacttcctcctcctcctcctcttcctccttgtcctctccttctATGGGCAACATGCCTGACTCCAGCATGAGAAGGAGGGGCGGGTGctctggaggagaggaagagaaaaggacCCGTGGGTGTGCAtctaaaaacagcagctcttgcTTCTCCTTTACACCTCCCAGCCCCTGACCCAGCCCTAACCCTAGTCCTACTTCCATTCCTTCCTCTGACAGATCCGGACCTTTCCCAGCCCCTGCCCCAGGcccaccctccatcccctcctctcccctgttatcACTGCTCTCTGTCCTAGCCTCTGCTTTCTGCGGGGTCCTCTGACTGGAGGGATCTGGCCCAGTTTTACTGTGGTGTCCAGCATTAGTGGAAGGTTTGTAAGTTTCCACCACATACATGTTGGGAGGTCTGAGATCCTGTTCATCGGTCCTGGGGTCTAGAGAGTGATGATGGTTTTCCTTCTGAGCCATGTCTCTAAAGCTGCTGTCATCACCAGCTCTGCTGCTGTCTGGTTTATAGTCCCCTAGTACATAGCTCTCCTGGGAGGGGTAGTCCTGATGACTGCTGCCATTGGTGCTCCTGAGTTTTCCTCCATCAGTGTTAGAATATTTATTTAAACCAACGCTGTTCGTGTTTTCTGTATGAAAATTGCTTTTTGACAAATAACTTTGTTGTTTTCGCTTCCCTTTCAAAGCTTGCACCTCCTCTTTAATTATGGAGGGGTTATTGTAGTCCTTGTAGTCCACATTGTAGGCCTCAGGAGCTGGAAGTGTGGAGTAAGATCCGGG

Function

NR:

description
uncharacterized protein LOC110486647

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1349482 True 2420 lncRNA 0.48 2 48619001 48621604

Neighbor

gene id symbol gene type direction distance location
LOC110486646 LOC106601550 coding downstream 46936 48544179 ~ 48572065 (-)
LOC110486643 LOC106606926 coding downstream 89006 48522069 ~ 48529995 (-)
LOC110486641 bcat1 coding downstream 104091 48506263 ~ 48514910 (-)
LOC110486634 LOC106601558 coding downstream 143280 48451625 ~ 48475721 (-)
LOC118938628 NA coding downstream 172271 48446637 ~ 48446730 (-)
LOC110485203 ppfia3 coding upstream 2202 48623806 ~ 48665589 (-)
LOC110486648 nucb1 coding upstream 48627 48670231 ~ 48683477 (-)
LOC110487552 LOC106601568 coding upstream 62378 48683982 ~ 48686124 (-)
LOC110486649 LOC106606880 coding upstream 67424 48689028 ~ 48697978 (-)
LOC110486651 LOC106601513 coding upstream 84109 48705713 ~ 48724776 (-)
G1183224 NA non-coding downstream 99294 48516721 ~ 48519707 (-)
G1183222 rpl27 non-coding downstream 120404 48496708 ~ 48498597 (-)
G1183223 rund1 non-coding downstream 125404 48490813 ~ 48493597 (-)
G1183212 NA non-coding downstream 130755 48487748 ~ 48488246 (-)
G1183217 NA non-coding downstream 187498 48428988 ~ 48431503 (-)
G1183319 NA non-coding upstream 607 48622211 ~ 48622756 (-)
G1183330 NA non-coding upstream 34747 48656351 ~ 48656752 (-)
G1183353 NA non-coding upstream 103998 48725602 ~ 48725877 (-)
G1183354 NA non-coding upstream 104388 48725992 ~ 48726228 (-)
G1183357 NA non-coding upstream 108103 48729707 ~ 48730020 (-)
G1183225 NA other downstream 148018 48435826 ~ 48470983 (-)
G1183196 NA other downstream 229283 48379267 ~ 48389718 (-)
G1183192 NA other downstream 242035 48364056 ~ 48376966 (-)
G1183190 NA other downstream 253901 48361598 ~ 48365100 (-)
G1183126 NA other downstream 359012 48259524 ~ 48259989 (-)
G1183337 NA other upstream 46184 48667788 ~ 48668082 (-)
LOC110486656 syt3 other upstream 276075 48875671 ~ 48936482 (-)
LOC110485205 LOC106597701 other upstream 351579 48959315 ~ 49053966 (-)
setd1a LOC106585476 other upstream 734774 49346540 ~ 49361234 (-)
LOC110486687 LOC106601611 other upstream 865322 49486817 ~ 49504819 (-)

Expression


Co-expression Network