G1182460


Basic Information

Item Value
gene id G1182460
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48739828 ~ 48740040 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1348470
CTTCAAATATATTATTTGCTGTGACATGGAGAGTGAGGGCGAGCATAATTATAGTAAATGGGCTACACAGATACTCACATTGTCACACATTCAATACAAGCAAAAGGCCCAGGAGTGTAGTCATGTACCATCCTGTTTCACTTGAAACCTGTATATTTTACCTTCCTTCCCAGGATTCCTGTTTCTGTCTGAATGTGTGAGTGTTCCTTATGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1348470 True 213 lncRNA 0.40 1 48739828 48740040

Neighbor

gene id symbol gene type direction distance location
LOC110486650 akts1 coding upstream 35449 48698203 ~ 48704379 (+)
LOC110486647 LOC106601548 coding upstream 117638 48598978 ~ 48622758 (+)
LOC110486644 LOC106601551 coding upstream 199341 48532510 ~ 48540487 (+)
ifi35 LOC106606925 coding upstream 233620 48500511 ~ 48506208 (+)
LOC110486640 LOC106601555 coding upstream 241153 48496613 ~ 48498675 (+)
LOC110486653 LOC106601538 coding downstream 7975 48748015 ~ 48796028 (+)
LOC110486658 NA coding downstream 217737 48957777 ~ 48959202 (+)
LOC118938637 NA coding downstream 218149 48958189 ~ 48958276 (+)
LOC118938636 NA coding downstream 218382 48958422 ~ 48958510 (+)
LOC118938635 NA coding downstream 218638 48958678 ~ 48958765 (+)
G1182449 NA non-coding upstream 14414 48725171 ~ 48725414 (+)
G1182422 NA non-coding upstream 74233 48665217 ~ 48665595 (+)
G1182416 NA non-coding upstream 77311 48662125 ~ 48662517 (+)
G1182359 NA non-coding upstream 175021 48563817 ~ 48564807 (+)
G1182463 NA non-coding downstream 3167 48743207 ~ 48763258 (+)
G1182493 NA non-coding downstream 70420 48810460 ~ 48865525 (+)
G1182498 NA non-coding downstream 77177 48817217 ~ 48820321 (+)
G1182521 NA non-coding downstream 135030 48875070 ~ 48875345 (+)
G1182492 NA non-coding downstream 135634 48875674 ~ 48879245 (+)
G1182354 LOC106601550 other upstream 178204 48556014 ~ 48561624 (+)
G1182153 NA other upstream 617253 48119613 ~ 48122575 (+)
G1181955 NA other upstream 996764 47742361 ~ 47743064 (+)
G1181636 NA other upstream 1190280 47549279 ~ 47549548 (+)
tmem100a LOC106606948 other upstream 1269816 47468012 ~ 47471205 (+)
G1182541 NA other downstream 206709 48946749 ~ 48947969 (+)
G1182555 NA other downstream 237960 48978000 ~ 48981403 (+)
G1182595 NA other downstream 323745 49063785 ~ 49065142 (+)
G1182629 NA other downstream 374935 49114975 ~ 49118697 (+)
LOC110486671 LOC100335037 other downstream 460946 49198846 ~ 49202693 (+)

Expression


Co-expression Network