G1183379


Basic Information

Item Value
gene id G1183379
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48764009 ~ 48772871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1349552
cttggagTTCCTGTCATAGGCCTCTTTAAACTGCACGTGCTTGCCAGCCTTGCTGCCCAGGTCCAGCCACTTCCCTTTCAGCCATTTCATGTTGGGCTTCCTCAGCAGGTCAGATGAGTCCACTTTAGCCACAAAGGTGACGTTCTTCCCTGATTACTGTAGTGCTCTCTGGCCTCTCTACAAATAGTCCGGTCAGCTCGGACTGCCCTCCTTGGACAGTCTCTAAAAGTAGGGAGAGGTcatagaggtcaggggttagaataaggtcattgatgactgctcATCAGACATCATAGACACAACACCATCAGTGAACAGACAAGTAGAGGCAGAAAACCAAACATTAGACCAAAGCACCTAACCTTTGTTTATAAATGCCATTAATTTATGAATATTTTGTCTACTAGGCAGCAAGATCAAAGGTCAGAGGTAAAGCTTGTCTTTGTTCACCCTGTGACTTATTGAGACTTCTTACATCCACATTTAGCAACAGCTTTTCTCAAAGACAGAGAAAAGTGCTGTGGCATGTGTTTCCACTCCCTGAAATGTCTCCATTATTCTAATGGATGATCATGAGAAATCATGACAATGACATCAGTCTTGTATTTAACTGAGGGTCAGTATCCAAGCGTCTAGTCAACACCAGAAGAGGGCCTCTAACAGCAGTAAGGTAAGCCCACCTGGGAATGAACAAGGAACTAAAAACACATCTGAAGACGTGTTTATCCATCCCTTTCCACTAGTCTTCTCCCACTGTGACAAAAGTAAATATAGCTCTTTAATGTTGTGATATTATCAAAGCATGACTGCTCGCTCCTGTTCCTTTGCGTGCTCCCTCCTTTTCAAAAAAAGGATTGCATTGTTTTGTGTCAGCAGATAGACAAATACAAGCTTAAGTATTTGTTTGTCTTACCATCATCGGGCAATTCTGtatcagggagaaagagagagagagaaacacagcgagGGAACACATTAGCTGCAGTATCTTTACTGTAATCTGAAGGATGAGCGTTTACTGAGCAGCTATGAAAACCTGACCTGCAggtgctctctcacacacacttaatgtctctctcttccctctctaactTGGATGAACATTTCCTTTCTTTTCAAAATGGAGGTAAAAACTAGACGGTTAATGAGTTATTTCCTCACTTGTCAAATTCAAACCAGTTGGTGACACTGTACTcatcattactattattattattattattgagaaTTTAGGGGAATTATTAGCGGTGCAAACGGAACACAATTGATTTGTTCTCTCACCTTCTGATTCTGACAAGAGCTCTATGGAAAAAGAGAGTTTATAAGCATAGAGAAGCAGGTAAAAAGCCATATCGATTGACCAATCGATTGGGTGAAAAGGTTGTCGAGAGAATGGAACAAGGGTCAAGAATCAAGTGAGGTCATGCACCTCCATAAACTCTGCTTTTATGGGCTCAGTTAATTTGATTGGAATCAAGTGACCCCTGTGCACAGATCCAGGCTCAGTTCTCTAGTGTGATTTAAATCATTTCAGTAAGAATGTGAATAGGTCAAGCTGATCCTGGACCAGCACCCAAGGGACACTTTTCCTTCAGCTCTTTACACCATTTCACTCTCACATTGGAAAGTCGCTGCGGTTTGAAACTGTGAGAGGTTGGGAGTGCAGCGATAAACACCTCAAATGGAACAGCAGAACCGGCATCCATCAAAACCATAACAATTCTTCAGTAAGATCATTTTGGAGGATAATGTGTATTATGGGAAATATTACTGTAGGTAAATATCACGTAATTGATTATTACTGTAACACTTCAGGAACAGATAATACCTTGATATTTCATATCAACATCTTTTGCAATACAGTGATTAATGATAAGGGATATGGTATTGTGCAGGAACAGTATTTGAACTAACGCAACAAAACAGCAAAACGTATCATCAACTTATCCTTCTATTAAACCATTACCTTAGTaagtgcacacatacacactggtcACGATATATACTCAgagtaaatatatacagtatatatcatttTGTAATTTGTAATTTAGATTACGTTTTCACTCTGCATCAATTTCGAGTCAAGGTCATTTGATGTTTAATACAATTCCTTCACTTGGATGCTTTGGCGAAACCATGATACTGTATCATGTCATGTCTAATCTCAACAGATGTTTTTTGCCAAAAACATGAATATCATATTAAGCACTAAAAATCATCTTAAGTCTATTCATAAGCAATAGAAAAATTATGATTTTATGCCATTTTGCCAATATGATCTTTATGTTTTTGGGAAACTCACCGCTGATCTCTAGTAATTAGTATCAGTCGGCGCTGATATCACAACAACTATCTGTCAGACTGATTCTCTGGGTCTAACTCCTCAACAGATGATTCCTAAAGATCTCTACATAAATTATACAGTATCCATAAACCCATCAAATAGGCCTGCAGGATCTTTTCCATTACTGACGGCCATCGCCAGAGCAATCCCAGGATTCAGTAGTCTCCGTTTGTCAGTCCACCGTGACGGACGCTCAGGTCACCGTCACACCGTGCCGTGACTGAGACTGACAGACATGCACGTTAACCAGGTGATTGACAGGAAGCAGGGAagcatacaaacacaaacacagaggggGAGTTGTGTATTGTTTCCTTTCCTTACCATCTCTGCACTCACTTCCCTCTGAATGAAAAGAAACAATTGGTACATAGACATTAGTACTGCGGACAGCGAAGGGTTAAACAACAACCAAATATACTGTCCCTGTGACTGGAGAAAAAAGTTGTGGATATATGAATATACGAAATACTAGATCATAAAAACaagacatacaaacatacataggCTTACCCATGATAACACTGGCATACATGCTGGTttatacaaatacacacaaacgCAGAATGCATTGATACATTTGTGCATTCATACAGTCACTGCACTACAATCCTTTTTGTTACAGTACCCTTCCTTGTCTCAGGGTGCTTCACCTCTAATAAAAGAAAGTAAAAGGTTTTATGGTTAAGTATGAGGAGAATGCTAATATATACAGTACTCGTCAAaagtttctttatttgtacttttttttataaattgcagaataatagtgaagacatcaaaactatgaaatagcacatatggaataatgtagtaaccaaaaaagtgatatattctatttcagattcttcaaagtatcccccctgtgccttgatgacagcttttcacactcttggtgtcacgccctgaccatagagagctgtttattctctatgttggttgggtcGAGGTGTGATTTAGGGTGGGTTATCTCGgggaattgtatttctatggtggcctgatatagttcccaatcagaggcagctgtttatcgttgtctctgattggggatcatatttaggtgctttgtgggatcttgtatTAGATATAGTTGCCAGCGAGCATTATATTATTATTAGCGTCATGTTTTGTTTGTTCGTTTTGTTCTTTGAAGTTTTCATTTCCAAaataaaggatggaaacataccacgctgcatcttggtatactccttatgacgaacgtgacacttggcattctctcaaccagcttcatgagatattcacctggaatgcatttaaatgaacagatgtgtcttgttaaaagttcatttgtggaatttatttccttcctaatgtgtttgagccaatcagttgtgttgtgacaaggtaagggtggtatacagaagatagcaaagggaaacgacagtcattattttaagacatgaaggtaagtCAATGCAGAACACTTCAAGAacagtagcaaaaaccatcaagcgctatgataaaattggctctcatgaggactgccacaggaaaggaagacccagagttacctctgctgcagaggataagttcattagtgttaaatgcacctcagattacagcccaaataaatgcttcacagaattcaagtaacagacacacctcaacaagaactgttcagaggagactgcgtgaatcaggccttcatggtcgaattgctgcaaagaaaccactactaaagaagaACAATAataagaaaaaacttgattgggCCAAAAatcacgaacaatggacattagactggcggaaatctgtcctttagtctgatgagaccaaattttagatttttggttccaaccgccatgtctttgtgagacgcagagtaggtgaacagatgatctccgcatgtgttgttcccaccgtgaagcatggaggaggtggtgtgatggtgtgggagtgctttaatggtgacagtgtctgtgatttatttagaattcaaggtacacttaaccagcatggctaccacagcattctgcagtgatatgccatcccatctggtttgcgcttagtgggactatcatttgtttttcaacagggcaatggcccaaaacacacctccaggctgtgtaagggctatttaaccaagaaggagagtgatggagtgctgcatcagatgtcctggcctccacaatcacccgacctcaacccaattgagatattctgggatgagttggaccacagagtggagGAAAAGCGGACAAatagtgctcagcatatgtgggaactccttccagattgttggaaaatcattcctcatgaggctggttgagaaaatgccaagagtgtgcaagctgtcatcaaggcaaatagtggctaccttgaagaatctaaaatctaaaatccatctattttgatttgcttaacactattttggttactacatgattccatatgtgttattttatagttctgatgtattcactattattctacaatgtaggaaaaatataaataaatcatgagaaggtgtgtctaaactttcaCTGGTACTATATATGCAGAAGCACACACTGAAatacccacacccacccacccaaaagACACTTCTGCAAATATGTATACAAGATACAAACAAACAAGTAAAGGCtaatacacagtgcattcgaaacCTATTTAGagcccttcactttttccatattttttgACGTGagagccttattgtaaaatggataaaatcatttttttcaatggaaacaggatgcacctgagctcaataccGAGTCTCATACAAAGGGTCTtaatactgatgtaaataaggaatttctgttttttcttttaaagaaatttgcaacaatttctaaaaacctgttttgctttgtcattatggggtattgtgtgtagatttttatttaatcaattttagaacaatactgtaacgtaacaaaatggcgATCCTCCTGCATACTTGCATCAACTTTCTAATTGTGAGGCTGCACACGTCTGTATATTTTAGCTTCTCAACTATAGATGATCGCCATTTTGCCTAGCTTATTGTAGTTGCATACAGCGTAGGGTGTAAATTAAGGCTTAACACATTGACTGAAAAGCTCTTACCCTCTGTGGCTGGGCCTGTGTTAATGATGCAGGCTGGGCCTGTGTTAACGTTGCAGGCTGGGCCTGTGTTAATGTTGCAGGCTGGGCCTGTGTTAAGGTTGAAGGCTGGGCCTGTGTTAATATTACAGGCTGGGCCTGTGTTAATGTTGCAGGCTGGGCCTGTGTTAATGTTGCAGGCTGGGCCTGTGTTAATGTTGCAGGCTGGGCCTGTGTTAAGGTTGAAGGCTGGGCCTGTGTTAATGTTGCAGGCTGGGCCTGTGTTAAGGTTGCAGGCTGGGCCTGTGTTAATATTACAGGCTGGGCCTGTGTTAATGTTGCAGGCTGGGCCTCTGTTAATTAAAATATGATTTTAATGTTAGCATGATGCAACTTGTACACACAAacagggccggctccaggcataagcgtCAAAAGCGGTCACTTACGTCCTCACACCTCGTGcactcaaggtttaaaaaggcttccaaagtttgtaatttccactttaaaacgTCAAACTTGATTTGCCTTAACGTAAAGTGTATCCCTACAAAATatatccatgaattataatcaacataataattcacattttcagTTACTGCAGAATTATTTTACTGCTGTAGCaatctggctcaaattaagatcctacatgtacatatacaCTCTCACATAAAGTACTCGTATACCCACAAGCAAATGcctccaccacctctctgatGAACCGTAGATAACACACTGACTTCAACTTAAtgctgtgtgtgttatacattgAAGGACCATATTAAGCCAGAACAGCTCTTACCCTCTACAGCAGGTTCGCCTTCTGTCAGATTAACAAGGCTATCAGGGAGGACGACTGGACTTCATTGTTGAATAGAACTGACATGATGCACAGTGTACACATACAGCATTCTCACAATATATGCAAACTTACCGTGTACACACACAACAACCCATGTGCTCGTGCTGCATACACTAATTTATGTAATTCATTCAGCCACAAAAACTTTTCCCCTCTATAGCAGGCTGGGCCTCTGTTAATACACACAAATGGATTTCAGTAGGAGGTACTGGACTTAAGTCCATATTGGAGATAGCATTATGTACAGACAGTCACGCGCACAtacacacgctgacacacacacacacgctcacacagacATACAAAAACAGATACAAACATACAACACGGACAAAAACCTATACCTGCACACATCCACATGCAATacatccacagatgacacaacagaATAGCTCTAACCCTCTTCAGCAGGCTGGGCCTCTGCCACTAAAACGAGAGGATTTCAGTGTGGAGTAAGTGTGTAATAAAGGTGGTATACTGCAGTAGCAGACactcacacaaactcacacactgaGTACAAGGAAATACACATCCGAAACGTTTCCTGAACAATCCTATTGTTTGTTGAGCAAACTCACAATCCTATTGCAGCTGGTAGTTTTACAAATGTACGTTGAtccaacagatttttttttttttttttacagcgtacacacacataaaataaaaataataaacacactcacacagaccacaccacacacaccccatacacacacgcacgcccaGATATACACACGcacccagaaacacacactcCAGTGCTTGCCAAAATAACCCACATAACAAACATCACCTCAACATTAACATAGGTAGTTCTTACCAACTGATTGGTGACCTGTTATCTCAGGTAATAAAAAACCCCAGTAAGAATCAGAAGAATCATGACAAATATATCATTTAAATGAATATAGTCTGCTTTGTCAGGCATAAACCAGTAGGATATTGTAATAGGCGTGAATATAAACGTGTGAAGCCTAAGTTAAGTGTAGTGGTGTTCTATCTGGTCAACACTGTCATGGTGCGTGGTGAGAATCATGCATGGCCACTCGGTCTCATCCCCACAGAAAGCTACTTCTGTGATTGGTCTTAGAGGCCTTACCATGATCCTCCGCTGGCTTCGCTGAGTGAGGGAAAACTGTTAACCGACATTACATTGGAATGATGAGGGGATGGTTATGCCCTActgactaacacaaacacacacaaagggacacaggttaaaacacacacacacacacacacacacacaccctgttctCACCCACCCTTATCTGTaaataaaagaaaaagaaaaaagagaAATTGAATCAGACATTGATTTTAGTATAGGCCTAACCATTCATCGAAGTATTTCATGTATACGTATTTGTCATTCATTTGTTATGAGTGGACTCACCAGCAGGTGCTGCTGCAACCTTATCTGTCTTGGCCGCTACAATTAAAGACAAACATATACAATAATGAATAACTAGAAAGCAAAGGTTAGATTCCAACCATATCATCTCGAAAACATCATGAACCATTAAacttacaatatatatatatattttttaattaagtttttatttattttaccccctttttctccccaatttcgtggcatccaattgttagtattgttgtctcatcgctacaactccgagtacgggctcgggagagacgaaggtcgaaagtcaagcatcctccgatacacaacccaaccgcactgcttcttaacacagcgcgcatccaacccagaagccagccacaccaatgtgtcggaggaaacactgtgtacCTGACAAcccggtcgcggctggttacgacagagcctgggcgcaaacccagagtctctggtggcacagctggcgctgcagtacagcgcccctaaccactgcgccacccgggaggccaattTACAATATAGTTAAGATAATATAAAATAATCACCACTGTGAATTACCAATATTTGACTTCACACTGTGCAAACATGCATACATACAAACATTCACAACTTATTTGAATGCATGTGTATTATGTAGAAGTCTAGATATGCATAATCCACGCATGCACACAGCACTGTAGTGTAAATTCAGAATGTTGATACATTAATGCATTCCCATGTACATTGTACATACAATATTATACCGGTACGTAGACACATAACACATAAGTTCATACGATAAACAAATACATATTCTAATGTAACCACAGAGGAGTTGCACATTCACTCAACCTTGCTTTGTGCAGTTCTTACCAATTCCTTCCGGCTCTGCCTCTGGCAAAGAAAGAGTATTGGAATTGGAGTCAATGTAAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1349552 True 8565 lncRNA 0.40 3 48764009 48772871

Neighbor

gene id symbol gene type direction distance location
LOC110486652 LOC106606918 coding downstream 24938 48731139 ~ 48739071 (-)
LOC110486651 LOC106601513 coding downstream 39233 48705713 ~ 48724776 (-)
LOC110486649 LOC106606880 coding downstream 66031 48689028 ~ 48697978 (-)
LOC110487552 LOC106601568 coding downstream 77885 48683982 ~ 48686124 (-)
LOC110486648 nucb1 coding downstream 80532 48670231 ~ 48683477 (-)
LOC110486654 LOC106606919 coding upstream 51597 48824468 ~ 48831876 (-)
LOC110486655 LOC106601541 coding upstream 85377 48858248 ~ 48872847 (-)
LOC110486656 syt3 coding upstream 102800 48875671 ~ 48936482 (-)
LOC110486657 LOC106595301 coding upstream 173857 48946728 ~ 48956570 (-)
LOC110485205 LOC106597701 coding upstream 188034 48959315 ~ 49053966 (-)
G1183363 NA non-coding downstream 21917 48741813 ~ 48742092 (-)
G1183362 NA non-coding downstream 22540 48741238 ~ 48741469 (-)
G1183361 NA non-coding downstream 23478 48740317 ~ 48740531 (-)
G1183357 NA non-coding downstream 33989 48729707 ~ 48730020 (-)
G1183354 NA non-coding downstream 37781 48725992 ~ 48726228 (-)
G1183375 NA non-coding upstream 17280 48790151 ~ 48796017 (-)
G1183396 NA non-coding upstream 34067 48806938 ~ 48807148 (-)
G1183424 NA non-coding upstream 111118 48883989 ~ 48934491 (-)
G1183432 NA non-coding upstream 131357 48904228 ~ 48905481 (-)
G1183436 NA non-coding upstream 167501 48940372 ~ 48940591 (-)
G1183337 NA other downstream 95927 48667788 ~ 48668082 (-)
G1183225 NA other downstream 293026 48435826 ~ 48470983 (-)
G1183196 NA other downstream 374291 48379267 ~ 48389718 (-)
G1183192 NA other downstream 387043 48364056 ~ 48376966 (-)
G1183190 NA other downstream 398909 48361598 ~ 48365100 (-)
setd1a LOC106585476 other upstream 583507 49346540 ~ 49361234 (-)
LOC110486687 LOC106601611 other upstream 714055 49486817 ~ 49504819 (-)
LOC118938314 NA other upstream 764328 49537199 ~ 49544276 (-)

Expression


Co-expression Network