G1182541


Basic Information

Item Value
gene id G1182541
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48946749 ~ 48947969 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1348583
TATTCTTTAGAAAGGCACTTACAGTATGAAAGGCTCAAATATACTGCTACAAGAGACAATGAGGGCCGAGGCTTACCtttcacacacatgcatgtatagtacacactcacatatacacgCATTTAGAAATGGAAAAGAAAAACCAGAACGTGGACAGGCCCAGAAATGGCATCCTATCCTTCACTTTGGCAAAGGTTCTATTAAGGGGAGTTGCCATCAAGAAGGCGATGAGAGGAGATCTATTACAGTCCCTCTGAAAGGAGATCCCAATCCTGTCACATCGTACTCTTATAACACACACAGGGTACAGGAGACATTACTGCTCATACTATTACTGATCAGGCTACAGGTATTGATGAATTGTGCTCATTGTCAAAGTTTCACTCCGTTCATAATAATAATCACTGATTAAAACCTGTCTAAGCACTTATTTCTACATAAATATATGTTTCACTAAAGCGAACAGGAGAGTTTATCTCTATAAGAACAGCAACCATACAGTATGGCTTCAGCATGAAGTGGTGACATGTACAGTACCTATAGAATCAGCATCGCATCTGTCAAATTGTACAAAAAAGGCATCATACATCATATAGCTTTCATATAGGTGTCTCAGGTAAATATATTAAACATTTTCCAACATAtttgaaagaagaaaaaaaacaggataTTTGATGCCGTGTATGTATGCCAAAAGTTCATTCAGAGCTATCATATCACCATAGTGTATTCTCTTTGGATGAAAGCTTTCCTGCAGATAGTATGGGCACTTTCTTcatttgttattatttatttattcataaaaaatgttttacctttatttaactaggcaagtcagttaagaacaaattcttatttacaatgacggcctaccccgaccaaaccctaacccggacgacgctgggccaattgtgcgccgccctgtgggactcccaatcacagccggatgtgatgcagcctggattcattAAGGAACAATACACAGTACACATCGGCTGAGGATCATTTCAGACACAATGTTTCTTATCAAAATGAGTCACTTTCGTTTTACAAACATAGTGGTGTAACTACACCGTCTCTACATAGTTGGCTGGGTagagtccctctctccctccatccttcatccctcTACACCAGCCCTGGTCATCCTCATCCTCAGTCTTCAG

Function

NR:

description
PREDICTED: protein kinase C and casein kinase substrate in neurons protein 3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1348583 True 1166 TUCP 0.40 3 48946749 48947969

Neighbor

gene id symbol gene type direction distance location
LOC110486653 LOC106601538 coding upstream 150721 48748015 ~ 48796028 (+)
LOC110486650 akts1 coding upstream 242370 48698203 ~ 48704379 (+)
LOC110486647 LOC106601548 coding upstream 324559 48598978 ~ 48622758 (+)
LOC110486644 LOC106601551 coding upstream 406262 48532510 ~ 48540487 (+)
ifi35 LOC106606925 coding upstream 440541 48500511 ~ 48506208 (+)
LOC110486658 NA coding downstream 9808 48957777 ~ 48959202 (+)
LOC118938637 NA coding downstream 10220 48958189 ~ 48958276 (+)
LOC118938636 NA coding downstream 10453 48958422 ~ 48958510 (+)
LOC118938635 NA coding downstream 10709 48958678 ~ 48958765 (+)
LOC110486662 LOC106606881 coding downstream 152038 49100007 ~ 49104036 (+)
G1182540 NA non-coding upstream 1782 48944407 ~ 48944967 (+)
G1182492 NA non-coding upstream 67504 48875674 ~ 48879245 (+)
G1182521 NA non-coding upstream 71404 48875070 ~ 48875345 (+)
G1182493 NA non-coding upstream 81224 48810460 ~ 48865525 (+)
G1182498 NA non-coding upstream 126428 48817217 ~ 48820321 (+)
G1182542 LOC106595301 non-coding downstream 1919 48949888 ~ 48956559 (+)
G1182547 NA non-coding downstream 9826 48957795 ~ 48959202 (+)
G1182550 LOC106594513 non-coding downstream 23905 48971874 ~ 48973071 (+)
G1182554 NA non-coding downstream 29547 48977516 ~ 48977900 (+)
G1182556 NA non-coding downstream 33585 48981554 ~ 48982061 (+)
G1182354 LOC106601550 other upstream 385125 48556014 ~ 48561624 (+)
G1182153 NA other upstream 824174 48119613 ~ 48122575 (+)
G1181955 NA other upstream 1203685 47742361 ~ 47743064 (+)
G1181636 NA other upstream 1397201 47549279 ~ 47549548 (+)
tmem100a LOC106606948 other upstream 1476737 47468012 ~ 47471205 (+)
G1182555 NA other downstream 30031 48978000 ~ 48981403 (+)
G1182595 NA other downstream 115816 49063785 ~ 49065142 (+)
G1182629 NA other downstream 167006 49114975 ~ 49118697 (+)
LOC110486671 LOC100335037 other downstream 253017 49198846 ~ 49202693 (+)
LOC110486678 NA other downstream 315681 49263529 ~ 49266771 (+)

Expression


Co-expression Network