G1182556


Basic Information

Item Value
gene id G1182556
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48981554 ~ 48982061 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1348603
CAATGAGGAAGTCTCCCATTCTCAGACCGGCTCTCCAGGCCACGCCTCCTTCGTCGACAGACTCCAGGTACTGCAGTGCTGGGAAGGCTGGGGTGGGAGTGAACTCCTCGATGGGGGTCTGAGCtgaagacagagaacagaggggtAACCAGCATTATGTCATAACCACTGTAACAACTAGACTGATGAAGCCCATGCAGCACAGTGAGACTGTCCAAGtgtgttcatctgtgtgtgtgcctgtgtgttaaaggcctgtctgtatgtctgactgtctatctATCAACAGCTGATCGCACGTGTTTCCTTACCCTTGGCTCCTCTCAGCACAAAGCCAAAACCCTCACTGTCTTTTTTCTGCAGAAGCACTGTCTTCTCCTTGATGATATAGTCActaagagagaggacagagagagatgaggagagacacTTAGCGATAACATGAGATACATTCAAAAAAAGGAGTGGAAAAAGGGGACAGcaggaagaagagaaagagagagaggta

Function

NR:

description
SH3 and multiple ankyrin repeat domains protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1348603 True 508 lncRNA 0.49 1 48981554 48982061

Neighbor

gene id symbol gene type direction distance location
LOC110486658 NA coding upstream 22352 48957777 ~ 48959202 (+)
LOC118938635 NA coding upstream 22789 48958678 ~ 48958765 (+)
LOC118938636 NA coding upstream 23044 48958422 ~ 48958510 (+)
LOC118938637 NA coding upstream 23278 48958189 ~ 48958276 (+)
LOC110486653 LOC106601538 coding upstream 185526 48748015 ~ 48796028 (+)
LOC110486662 LOC106606881 coding downstream 117946 49100007 ~ 49104036 (+)
LOC118936277 prf1 coding downstream 152890 49134951 ~ 49138251 (+)
LOC110486671 LOC100335037 coding downstream 216785 49198846 ~ 49202693 (+)
LOC110486670 LOC106606891 coding downstream 228404 49210465 ~ 49213419 (+)
LOC110486678 NA coding downstream 281468 49263529 ~ 49266771 (+)
G1182554 NA non-coding upstream 3654 48977516 ~ 48977900 (+)
G1182550 LOC106594513 non-coding upstream 8483 48971874 ~ 48973071 (+)
G1182547 NA non-coding upstream 22352 48957795 ~ 48959202 (+)
G1182542 LOC106595301 non-coding upstream 24995 48949888 ~ 48956559 (+)
G1182540 NA non-coding upstream 36587 48944407 ~ 48944967 (+)
G1182557 NA non-coding downstream 3113 48985174 ~ 48985475 (+)
G1182560 NA non-coding downstream 7608 48989669 ~ 48989912 (+)
G1182562 NA non-coding downstream 12372 48994433 ~ 48994681 (+)
G1182578 NA non-coding downstream 39689 49021750 ~ 49021956 (+)
G1182580 NA non-coding downstream 43829 49025890 ~ 49026101 (+)
G1182555 NA other upstream 151 48978000 ~ 48981403 (+)
G1182541 NA other upstream 33585 48946749 ~ 48947969 (+)
G1182354 LOC106601550 other upstream 419930 48556014 ~ 48561624 (+)
G1182153 NA other upstream 858979 48119613 ~ 48122575 (+)
G1181955 NA other upstream 1238490 47742361 ~ 47743064 (+)
G1182595 NA other downstream 81724 49063785 ~ 49065142 (+)
G1182629 NA other downstream 132914 49114975 ~ 49118697 (+)
LOC110486677 LOC106601591 other downstream 299598 49281106 ~ 49284116 (+)

Expression


Co-expression Network