G1182562


Basic Information

Item Value
gene id G1182562
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48994433 ~ 48994681 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1348609
TTCATCTCCTGGGCAGATGTATCAGGCTGGCACCCAGGCTAGCAAACACTTTGAAAAAACACCCAGCCAGACAGTCACACAGCCATTCtctgacacagacacactaaacacacacacctttgacTTTGTCTCCCTTGCTGATGctaatctctctgtctccctgggcGGAGTGGGAACGCGTGGCCACAAACACACGTCCTGGGACGGCGCTGTAGAGACGCCTCCGCTGGCCCCCTGCTGCCGTAACCG

Function

NR:

description
SH3 and multiple ankyrin repeat domains protein 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1348609 True 249 lncRNA 0.56 1 48994433 48994681

Neighbor

gene id symbol gene type direction distance location
LOC110486658 NA coding upstream 35231 48957777 ~ 48959202 (+)
LOC118938635 NA coding upstream 35668 48958678 ~ 48958765 (+)
LOC118938636 NA coding upstream 35923 48958422 ~ 48958510 (+)
LOC118938637 NA coding upstream 36157 48958189 ~ 48958276 (+)
LOC110486653 LOC106601538 coding upstream 198405 48748015 ~ 48796028 (+)
LOC110486662 LOC106606881 coding downstream 105326 49100007 ~ 49104036 (+)
LOC118936277 prf1 coding downstream 140270 49134951 ~ 49138251 (+)
LOC110486671 LOC100335037 coding downstream 204165 49198846 ~ 49202693 (+)
LOC110486670 LOC106606891 coding downstream 215784 49210465 ~ 49213419 (+)
LOC110486678 NA coding downstream 268848 49263529 ~ 49266771 (+)
G1182560 NA non-coding upstream 4521 48989669 ~ 48989912 (+)
G1182557 NA non-coding upstream 8958 48985174 ~ 48985475 (+)
G1182556 NA non-coding upstream 12372 48981554 ~ 48982061 (+)
G1182554 NA non-coding upstream 16533 48977516 ~ 48977900 (+)
G1182550 LOC106594513 non-coding upstream 21362 48971874 ~ 48973071 (+)
G1182578 NA non-coding downstream 27069 49021750 ~ 49021956 (+)
G1182580 NA non-coding downstream 31209 49025890 ~ 49026101 (+)
G1182581 NA non-coding downstream 32155 49026836 ~ 49027183 (+)
G1182582 NA non-coding downstream 33278 49027959 ~ 49028241 (+)
G1182583 NA non-coding downstream 34134 49028815 ~ 49029085 (+)
G1182555 NA other upstream 13030 48978000 ~ 48981403 (+)
G1182541 NA other upstream 46464 48946749 ~ 48947969 (+)
G1182354 LOC106601550 other upstream 432809 48556014 ~ 48561624 (+)
G1182153 NA other upstream 871858 48119613 ~ 48122575 (+)
G1181955 NA other upstream 1251369 47742361 ~ 47743064 (+)
G1182595 NA other downstream 69104 49063785 ~ 49065142 (+)
G1182629 NA other downstream 120294 49114975 ~ 49118697 (+)
LOC110486677 LOC106601591 other downstream 286978 49281106 ~ 49284116 (+)

Expression


Co-expression Network