Gene
RNA
| Item | Value |
|---|---|
| gene id | G1183273 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 49295176 ~ 49299864 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: myosin regulatory light chain 2, skeletal muscle isoform, partial |
| id | description |
|---|
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1349424 | False | 2303 | lncRNA | 0.46 | 3 | 49295176 | 49299864 |
| TU1349425 | False | 2012 | lncRNA | 0.46 | 4 | 49295176 | 49299864 |
| TU1349428 | False | 1795 | lncRNA | 0.46 | 5 | 49295176 | 49299864 |
| TU1349429 | False | 1793 | lncRNA | 0.46 | 5 | 49295176 | 49299864 |
| TU1349432 | True | 1746 | lncRNA | 0.45 | 4 | 49296056 | 49299864 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| cd2bp2 | cd2b2 | coding | downstream | 14066 | 49278149 ~ 49281110 (-) |
| prr14 | LOC106601590 | coding | downstream | 17377 | 49267608 ~ 49277799 (-) |
| rusf1 | cssa06h16orf58 | coding | downstream | 31841 | 49251627 ~ 49263335 (-) |
| LOC110486672 | LOC106606893 | coding | downstream | 69914 | 49221048 ~ 49225262 (-) |
| LOC110486673 | elob | coding | downstream | 75629 | 49215758 ~ 49219547 (-) |
| LOC110486679 | LOC106601593 | coding | upstream | 289 | 49300153 ~ 49312989 (-) |
| hsd3b7 | hsd3b7 | coding | upstream | 26858 | 49326722 ~ 49339857 (-) |
| setd1a | LOC106585476 | coding | upstream | 46676 | 49346540 ~ 49361234 (-) |
| LOC110486683 | ccdc47 | coding | upstream | 65554 | 49365418 ~ 49369859 (-) |
| kcnh2 | kcnh2 | coding | upstream | 88294 | 49388158 ~ 49429351 (-) |
| G1183512 | NA | non-coding | downstream | 125832 | 49168686 ~ 49169344 (-) |
| G1183515 | NA | non-coding | downstream | 150992 | 49143255 ~ 49144184 (-) |
| G1183493 | NA | non-coding | downstream | 193292 | 49099736 ~ 49101884 (-) |
| LOC110487553 | NA | non-coding | downstream | 214228 | 49079125 ~ 49081022 (-) |
| G1183473 | NA | non-coding | downstream | 250403 | 49044511 ~ 49044773 (-) |
| G1183567 | NA | non-coding | upstream | 17418 | 49317282 ~ 49317483 (-) |
| G1183297 | NA | non-coding | upstream | 25163 | 49325027 ~ 49325527 (-) |
| G1183588 | NA | non-coding | upstream | 133073 | 49432937 ~ 49433171 (-) |
| G1183590 | NA | non-coding | upstream | 135904 | 49435768 ~ 49435981 (-) |
| G1183592 | NA | non-coding | upstream | 139287 | 49439151 ~ 49439353 (-) |
| LOC110485205 | LOC106597701 | other | downstream | 317768 | 48959315 ~ 49053966 (-) |
| LOC110486656 | syt3 | other | downstream | 358719 | 48875671 ~ 48936482 (-) |
| G1183337 | NA | other | downstream | 627094 | 48667788 ~ 48668082 (-) |
| G1183225 | NA | other | downstream | 824193 | 48435826 ~ 48470983 (-) |
| G1183196 | NA | other | downstream | 905458 | 48379267 ~ 48389718 (-) |
| LOC110486687 | LOC106601611 | other | upstream | 187062 | 49486817 ~ 49504819 (-) |
| LOC118938314 | NA | other | upstream | 237335 | 49537199 ~ 49544276 (-) |
| G1183706 | NA | other | upstream | 385474 | 49685338 ~ 49688456 (-) |
| LOC110486698 | LOC106601594 | other | upstream | 535799 | 49831067 ~ 49853671 (-) |
