G1183273


Basic Information

Item Value
gene id G1183273
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49295176 ~ 49299864 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1349424
GTACAAAAGATAAGAGCTTTTATTCACAGTTAGTCCCTTTTATTCGTTACAGAGGAGTTTCTGGCAGACTAAAGCTAGTCCAGGTGCAGAAAACAAAGGAGCTTATAGAAAACAAAGAGGTAGAACTaaaggaggaaagggaggagggaaaggaggtGAAGACGAGTGTTTTCTTTGggtcctttctcttctctctagcAGCCTTTCACTTCTTGAGAAAAACGTAGCCGTCACTTTAAggagaccatgtttttctctagCCTCATTCCTTCTTAGAATATCTCCTATTTTCCCATCTTGTCTACAGGAGATAACATCTACAATATTTATAGATCGATATCCCTCTGTTTGGTTTATTTGCCCACCTGAGGGTTAAATTAAGGGGGAGTGAAAGGACTTCCAGGTCTAACCTCAGCTGTTGCAGCCGAGGCAAAGACTGGTGCTCCTTTTCACCTTGGGGTTTACACATCCATACCACAGCAGTGGAATACGACTTGCTGTGTGCATTTCTTCTaacagagagactggggaaacAACCAATGATAGGAGTAAGAgatgaaaaggaggaagagggttAAGGGAAGGGAAAGCGgttgagaaagagatggagatgtTAAAAGATCATTTTTATTGAAAATAATCCCATATCCCCACGaacaaacatagacaacccatGAGCACCCGCTCTCACACAAATGTCTTGAGTGGAGACAAGTCTTTTAGAGAatttgtgtgagtgagagacagagcaCATGAGTACACATAAAGAGAATGAAGGTATGAGAAAAtagaaggaagaagagaggagcaggAAGGTAGAATGACAAGGGAGGCTGTTTTCTTTTCTTCTGTCTGTTTCAttactcctccttctcctctccgtGTGTGATGACGTAGCAGATTTGCTTGTAGTCTACGTTGCCGGCCACATCTGGGGGGAAGGCAGCCCACAGGTTCTTCatctgaggggaggagaaggagggtcaGCCACTCGCCAAGTCAAGGGACAACGAGAGATCATGATGATATTCAAACTGAATGATTAGAAATGTATTCACCTCCTCTGCAGAGAACCTGTCGCACTGAGTGGTCAGGAGCTCctgaaggctagagagagagggagacaaagtcAGAAACATTCATGAAGCTGTGGATTCTGTTATGGAGTGCACTCATTACTACAACTGTAAAATAAGGAAGGAAATATTCTCACAAGTCCTTCTTGATGAAACCGGTAGCATCGGGGTCCAAGACCTTGAAAGCACTAACGATGACATCCTCGGGATCAGCCCCTGAGACACACAGAGCGTCAGTCAGGCATGTTACACTGGCAGCAAGACACATGCAATGTCCTCAGATATGGAAGTGTACTTAGAAAGCCACTAACACTTTGAAGCGATTATAACCTGGTTATAACAAGTTAGACAGTGAGCCTAACAGAGTCAAATTAAGAAATTAGGAGATGTGCAACAGAAATAAAGCAAGCAAGTACAGTGAGTTATAGACCCACCCTTGAGCTTCTCTCCGAACATGGTGAGGAAGACGGTGAAGTTGATGGGGCCGCTGGCCTCCTTGACCATGGCTTCCAGCTCCTCATTCTTCACATTCAACTGGCCTACAGAGCAGGGAGGGAGTGTAGGTTAGCTAGAACcattatctatctatctctctctctctctctctctctctctctctctctctctcttacacacacacaaccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacacacacacatatatacagtacattgtggACATACTAAGGCACACTTTTAATAGAGACAAGTCAGTCACATATGTCCTCAGAATCTTAAAAGGTCTTAAATGTAACCCTTGCTCACCCATTGAGGCCAGCACGTCCCTTAAGTCATCCTTGCTGATGATACCGTCTCTGTTCTGGTCAATGATTGTGAAAGCCTTGTACTCCTGGATCTGGCTCTGCTCAAACATGGAGAACACGTTGGAGGAACCGCCCTCTGCTGCTGCTCCCCTCCTCTTGGCCTTCTTGGGTGCATCTCGAGACGGTGTGTATGGAGGTTTGGATGGTCAACAAGAGAAGAGACTGATGTGAAGCCGCATTAAACCCCTATCCTCGGGGGCTTATATACCTCTGTAGACCGCGCTAACTTTAGCCACAGCCTCAAGTTTGGATttgtagaggcagagagagggagagagggagggatgagtttGAAGCAAAAGTTAAGCGACAGGCAGAATGAGGGACAAGCTATCAC
>TU1349425
GTACAAAAGATAAGAGCTTTTATTCACAGTTAGTCCCTTTTATTCGTTACAGAGGAGTTTCTGGCAGACTAAAGCTAGTCCAGGTGCAGAAAACAAAGGAGCTTATAGAAAACAAAGAGGTAGAACTaaaggaggaaagggaggagggaaaggaggtGAAGACGAGTGTTTTCTTTGggtcctttctcttctctctagcAGCCTTTCACTTCTTGAGAAAAACGTAGCCGTCACTTTAAggagaccatgtttttctctagCCTCATTCCTTCTTAGAATATCTCCTATTTTCCCATCTTGTCTACAGGAGATAACATCTACAATATTTATAGATCGATATCCCTCTGTTTGGTTTATTTGCCCACCTGAGGGTTAAATTAAGGGGGAGTGAAAGGACTTCCAGGTCTAACCTCAGCTGTTGCAGCCGAGGCAAAGACTGGTGCTCCTTTTCACCTTGGGGTTTACACATCCATACCACAGCAGTGGAATACGACTTGCTGTGTGCATTTCTTCTaacagagagactggggaaacAACCAATGATAGGAGTAAGAgatgaaaaggaggaagagggttAAGGGAAGGGAAAGCGgttgagaaagagatggagatgtTAAAAGATCATTTTTATTGAAAATAATCCCATATCCCCACGaacaaacatagacaacccatGAGCACCCGCTCTCACACAAATGTCTTGAGTGGAGACAAGTCTTTTAGAGAatttgtgtgagtgagagacagagcaCATGAGTACACATAAAGAGAATGAAGGTATGAGAAAAtagaaggaagaagagaggagcaggAAGGTAGAATGACAAGGGAGGCTGTTTTCTTTTCTTCTGTCTGTTTCAttactcctccttctcctctccgtGTGTGATGACGTAGCAGATTTGCTTGTAGTCTACGTTGCCGGCCACATCTGGGGGGAAGGCAGCCCACAGGTTCTTCatctgaggggaggagaaggagggtcaGCCACTCGCCAAGTCAAGGGACAACGAGAGATCATGATGATATTCAAACTGAATGATTAGAAATGTATTCACCTCCTCTGCAGAGAACCTGTCGCACTGAGTGGTCAGGAGCTCctgaaggctagagagagagggagacaaagtcAGAAACATTCATGAAGCTGTGGATTCTGTTATGGAGTGCACTCATTACTACAACTGTAAAATAAGGAAGGAAATATTCTCACAAGTCCTTCTTGATGAAACCGGTAGCATCGGGGTCCAAGACCTTGAAAGCACTAACGATGACATCCTCGGGATCAGCCCCTGAGACACACAGAGCGTCAGTCAGGCATGTTACACTGGCAGCAAGACACATGCAATGTCCTCAGATATGGAAGTGTACTTAGAAAGCCACTAACACTTTGAAGCGATTATAACCTGGTTATAACAAGTTAGACAGTGAGCCTAACAGAGTCAAATTAAGAAATTAGGAGATGTGCAACAGAAATAAAGCAAGCAAGTACAGTGAGTTATAGACCCACCCTTGAGCTTCTCTCCGAACATGGTGAGGAAGACGGTGAAGTTGATGGGGCCGCTGGCCTCCTTGACCATGGCTTCCAGCTCCTCATTCTTCACATTCAACTGGCCATTGAGGCCAGCACGTCCCTTAAGTCATCCTTGCTGATGATACCGTCTCTGTTCTGGTCAATGATTGTGAAAGCTCCTTGTACTCCTGGATCTGGCTCTGCTCAAACATGGAGAACACGTTGGAGGAACCGCCCTCTGCTGCTGCTCCCCTCCTCTTGGCCTTCTTGGGTGCATCTCGAGACGGTGTGTATGGAGGTTTGGATGGTCAACAAGAGAAGAGACTGATGTGAAGCCGCATTAAACCCCTATCCTCGGGGGCTTATATACCTCTGTAGACCGCGCTAACTTTAGCCACAGCCTCAAGTTTGGATttgtagaggcagagagagggagagagggagggatgagtttGAAGCAAAAGTTAAGCGACAGGCAGAATGAGGGACAAGCTATCAC
>TU1349428
GTACAAAAGATAAGAGCTTTTATTCACAGTTAGTCCCTTTTATTCGTTACAGAGGAGTTTCTGGCAGACTAAAGCTAGTCCAGGTGCAGAAAACAAAGGAGCTTATAGAAAACAAAGAGGTAGAACTaaaggaggaaagggaggagggaaaggaggtGAAGACGAGTGTTTTCTTTGggtcctttctcttctctctagcAGCCTTTCACTTCTTGAGAAAAACGTAGCCGTCACTTTAAggagaccatgtttttctctagCCTCATTCCTTCTTAGAATATCTCCTATTTTCCCATCTTGTCTACAGGAGATAACATCTACAATATTTATAGATCGATATCCCTCTGTTTGGTTTATTTGCCCACCTGAGGGTTAAATTAAGGGGGAGTGAAAGGACTTCCAGGTCTAACCTCAGCTGTTGCAGCCGAGGCAAAGACTGGTGCTCCTTTTCACCTTGGGGTTTACACATCCATACCACAGCAGTGGAATACGACTTGCTGTGTGCATTTCTTCTaacagagagactggggaaacAACCAATGATAGGAGTAAGAgatgaaaaggaggaagagggttAAGGGAAGGGAAAGCGgttgagaaagagatggagatgtTAAAAGATCATTTTTATTGAAAATAATCCCATATCCCCACGaacaaacatagacaacccatGAGCACCCGCTCTCACACAAATGTCTTGAGTGGAGACAAGTCTTTTAGAGAatttgtgtgagtgagagacagagcaCATGAGTACACATAAAGAGAATGAAGGTATGAGAAAAtagaaggaagaagagaggagcaggAAGGTAGAATGACAAGGGAGGCTGTTTTCTTTTCTTCTGTCTGTTTCAttactcctccttctcctctccgtGTGTGATGACGTAGCAGATTTGCTTGTAGTCTACGTTGCCGGCCACATCTGGGGGGAAGGCAGCCCACAGGTTCTTCatctgaggggaggagaaggagggtcaGCCACTCGCCAAGTCAAGGGACAACGAGAGATCATGATGATATTCAAACTGAATGATTAGAAATGTATTCACCTCCTCTGCAGAGAACCTGTCGCACTGAGTGGTCAGGAGCTCctgaaggctagagagagagggagacaaagtcAGAAACATTCATGAAGCTGTGGATTCTGTTATGGAGTGCACTCATTACTACAACTGTAAAATAAGGAAGGAAATATTCTCACAAGTCCTTCTTGATGAAACCGGTAGCATCGGGGTCCAAGACCTTGAAAGCACTAACGATGACATCCTCGGGATCAGCCCCTTGAGCTTCTCTCCGAACATGGTGAGGAAGACGGTGAAGTTGATGGGGCCGCTGGCCTCCTTGACCATGGCTTCCAGCTCCTCATTCTTCACATTCAACTGGCCTCCATTGAGGCCAGCACGTCCCTTAAGTCATCCTTGCTGATGATACCGTCTCTGTTCTGGTCAATGATTGTGAAAGCCTCTTGTACTCCTGGATCTGGCTCTGCTCAAACATGGAGAACACGTTGGAGGAACCGCCCTCTGCTGCTGCTCCCCTCCTCTTGGCCTTCTTGGGTGCCTTCGAGACGGTGTGTATGGAGGTTTGGATGGTCAACAAGAGAAGAGACTGATGTGAAGCCGCATTAAACCCCTATCCTCGGGGGCTTATATACCTCTGTAGACCGCGCTAACTTTAGCCACAGCCTCAAGTTTGGATttgtagaggcagagagagggagagagggagggatgagtttGAAGCAAAAGTTAAGCGACAGGCAGAATGAGGGACAAGCTATCAC
>TU1349429
GTACAAAAGATAAGAGCTTTTATTCACAGTTAGTCCCTTTTATTCGTTACAGAGGAGTTTCTGGCAGACTAAAGCTAGTCCAGGTGCAGAAAACAAAGGAGCTTATAGAAAACAAAGAGGTAGAACTaaaggaggaaagggaggagggaaaggaggtGAAGACGAGTGTTTTCTTTGggtcctttctcttctctctagcAGCCTTTCACTTCTTGAGAAAAACGTAGCCGTCACTTTAAggagaccatgtttttctctagCCTCATTCCTTCTTAGAATATCTCCTATTTTCCCATCTTGTCTACAGGAGATAACATCTACAATATTTATAGATCGATATCCCTCTGTTTGGTTTATTTGCCCACCTGAGGGTTAAATTAAGGGGGAGTGAAAGGACTTCCAGGTCTAACCTCAGCTGTTGCAGCCGAGGCAAAGACTGGTGCTCCTTTTCACCTTGGGGTTTACACATCCATACCACAGCAGTGGAATACGACTTGCTGTGTGCATTTCTTCTaacagagagactggggaaacAACCAATGATAGGAGTAAGAgatgaaaaggaggaagagggttAAGGGAAGGGAAAGCGgttgagaaagagatggagatgtTAAAAGATCATTTTTATTGAAAATAATCCCATATCCCCACGaacaaacatagacaacccatGAGCACCCGCTCTCACACAAATGTCTTGAGTGGAGACAAGTCTTTTAGAGAatttgtgtgagtgagagacagagcaCATGAGTACACATAAAGAGAATGAAGGTATGAGAAAAtagaaggaagaagagaggagcaggAAGGTAGAATGACAAGGGAGGCTGTTTTCTTTTCTTCTGTCTGTTTCAttactcctccttctcctctccgtGTGTGATGACGTAGCAGATTTGCTTGTAGTCTACGTTGCCGGCCACATCTGGGGGGAAGGCAGCCCACAGGTTCTTCatctgaggggaggagaaggagggtcaGCCACTCGCCAAGTCAAGGGACAACGAGAGATCATGATGATATTCAAACTGAATGATTAGAAATGTATTCACCTCCTCTGCAGAGAACCTGTCGCACTGAGTGGTCAGGAGCTCctgaaggctagagagagagggagacaaagtcAGAAACATTCATGAAGCTGTGGATTCTGTTATGGAGTGCACTCATTACTACAACTGTAAAATAAGGAAGGAAATATTCTCACAAGTCCTTCTTGATGAAACCGGTAGCATCGGGGTCCAAGACCTTGAAAGCACTAACGATGACATCCTCGGGATCAGCCCCTTGAGCTTCTCTCCGAACATGGTGAGGAAGACGGTGAAGTTGATGGGGCCGCTGGCCTCCTTGACCATGGCTTCCAGCTCCTCATTCTTCACATTCAACTGGCCATTGAGGCCAGCACGTCCCTTAAGTCATCCTTGCTGATGATACCGTCTCTGTTCTGGTCAATGATTGTGAAAGCTCCTTGTACTCCTGGATCTGGCTCTGCTCAAACATGGAGAACACGTTGGAGGAACCGCCCTCTGCTGCTGCTCCCCTCCTCTTGGCCTTCTTGGGTGCATCTCGAGACGGTGTGTATGGAGGTTTGGATGGTCAACAAGAGAAGAGACTGATGTGAAGCCGCATTAAACCCCTATCCTCGGGGGCTTATATACCTCTGTAGACCGCGCTAACTTTAGCCACAGCCTCAAGTTTGGATttgtagaggcagagagagggagagagggagggatgagtttGAAGCAAAAGTTAAGCGACAGGCAGAATGAGGGACAAGCTATCAC
>TU1349432
GTACAAAAGATAAGAGCTTTTATTCACAGTTAGTCCCTTTTATTCGTTACAGAGGAGTTTCTGGCAGACTAAAGCTAGTCCAGGTGCAGAAAACAAAGGAGCTTATAGAAAACAAAGAGGTAGAACTaaaggaggaaagggaggagggaaaggaggtGAAGACGAGTGTTTTCTTTGggtcctttctcttctctctagcAGCCTTTCACTTCTTGAGAAAAACGTAGCCGTCACTTTAAggagaccatgtttttctctagCCTCATTCCTTCTTAGAATATCTCCTATTTTCCCATCTTGTCTACAGGAGATAACATCTACAATATTTATAGATCGATATCCCTCTGTTTGGTTTATTTGCCCACCTGAGGGTTAAATTAAGGGGGAGTGAAAGGACTTCCAGGTCTAACCTCAGCTGTTGCAGCCGAGGCAAAGACTGGTGCTCCTTTTCACCTTGGGGTTTACACATCCATACCACAGCAGTGGAATACGACTTGCTGTGTGCATTTCTTCTaacagagagactggggaaacAACCAATGATAGGAGTAAGAgatgaaaaggaggaagagggttAAGGGAAGGGAAAGCGgttgagaaagagatggagatgtTAAAAGATCATTTTTATTGAAAATAATCCCATATCCCCACGaacaaacatagacaacccatGAGCACCCGCTCTCACACAAATGTCTTGAGTGGAGACAAGTCTTTTAGAGAatttgtgtgagtgagagacagagcaCATGAGTACACATAAAGAGAATGAAGGTATGAGAAAAtagaaggaagaagagaggagcaggAAGGTAGAATGACAAGGGAGGCTGTTTTCTTTTCTTCTGTCTGTTTCAttactcctccttctcctctccgtGTGTGATGACGTAGCAGATTTGCTTGTAGTCTACGTTGCCGGCCACATCTGGGGGGAAGGCAGCCCACAGGTTCTTCatcCCTCTGCAGAGAACCTGTCGCACTGAGTGGTCAGGAGCTCctgaaggctagagagagagggagacaaagtcAGAAACATTCATGAAGCTGTGGATTCTGTTATGGAGTGCACTCATTACTACAACTGTAAAATAAGGAAGGAAATATTCTCACAAGTCCTTCTTGATGAAACCGGTAGCATCGGGGTCCAAGACCTTGAAAGCACTAACGATGACATCCTCGGGATCAGCCCCTGAGACACACAGAGCGTCAGTCAGGCATGTTACACTGGCAGCAAGACACATGCAATGTCCTCAGATATGGAAGTGTACTTAGAAAGCCACTAACACTTTGAAGCGATTATAACCTGGTTATAACAAGTTAGACAGTGAGCCTAACAGAGTCAAATTAAGAAATTAGGAGATGTGCAACAGAAATAAAGCAAGCAAGTACAGTGAGTTATAGACCCACCCTTGAGCTTCTCTCCGAACATGGTGAGGAAGACGGTGAAGTTGATGGGGCCGCTGGCCTCCTTGACCATGGCTTCCAGCTCCTCATTCTTCACATTCAACTGGCCTATGAGGCCAGCACGTCCCTTAAGTCATCCTTGCTGATGATACCGTCTCTGTTCTGGTCAATGATTGTGAAAGCCTGATGTACTCCTGGATCTGGCTCTGCTCAAACATGGAGAACACGTTGGAGGAACCGCCCTCTGCTGCTGCTCCCCTCCTCTTGGCCTTCTTGGGTGCCTGAAGGACAAACACATCAACTGCTTAACAATGGGACCTTCTAGGTCTGTTCATC

Function

NR:

description
PREDICTED: myosin regulatory light chain 2, skeletal muscle isoform, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1349424 False 2303 lncRNA 0.46 3 49295176 49299864
TU1349425 False 2012 lncRNA 0.46 4 49295176 49299864
TU1349428 False 1795 lncRNA 0.46 5 49295176 49299864
TU1349429 False 1793 lncRNA 0.46 5 49295176 49299864
TU1349432 True 1746 lncRNA 0.45 4 49296056 49299864

Neighbor

gene id symbol gene type direction distance location
cd2bp2 cd2b2 coding downstream 14066 49278149 ~ 49281110 (-)
prr14 LOC106601590 coding downstream 17377 49267608 ~ 49277799 (-)
rusf1 cssa06h16orf58 coding downstream 31841 49251627 ~ 49263335 (-)
LOC110486672 LOC106606893 coding downstream 69914 49221048 ~ 49225262 (-)
LOC110486673 elob coding downstream 75629 49215758 ~ 49219547 (-)
LOC110486679 LOC106601593 coding upstream 289 49300153 ~ 49312989 (-)
hsd3b7 hsd3b7 coding upstream 26858 49326722 ~ 49339857 (-)
setd1a LOC106585476 coding upstream 46676 49346540 ~ 49361234 (-)
LOC110486683 ccdc47 coding upstream 65554 49365418 ~ 49369859 (-)
kcnh2 kcnh2 coding upstream 88294 49388158 ~ 49429351 (-)
G1183512 NA non-coding downstream 125832 49168686 ~ 49169344 (-)
G1183515 NA non-coding downstream 150992 49143255 ~ 49144184 (-)
G1183493 NA non-coding downstream 193292 49099736 ~ 49101884 (-)
LOC110487553 NA non-coding downstream 214228 49079125 ~ 49081022 (-)
G1183473 NA non-coding downstream 250403 49044511 ~ 49044773 (-)
G1183567 NA non-coding upstream 17418 49317282 ~ 49317483 (-)
G1183297 NA non-coding upstream 25163 49325027 ~ 49325527 (-)
G1183588 NA non-coding upstream 133073 49432937 ~ 49433171 (-)
G1183590 NA non-coding upstream 135904 49435768 ~ 49435981 (-)
G1183592 NA non-coding upstream 139287 49439151 ~ 49439353 (-)
LOC110485205 LOC106597701 other downstream 317768 48959315 ~ 49053966 (-)
LOC110486656 syt3 other downstream 358719 48875671 ~ 48936482 (-)
G1183337 NA other downstream 627094 48667788 ~ 48668082 (-)
G1183225 NA other downstream 824193 48435826 ~ 48470983 (-)
G1183196 NA other downstream 905458 48379267 ~ 48389718 (-)
LOC110486687 LOC106601611 other upstream 187062 49486817 ~ 49504819 (-)
LOC118938314 NA other upstream 237335 49537199 ~ 49544276 (-)
G1183706 NA other upstream 385474 49685338 ~ 49688456 (-)
LOC110486698 LOC106601594 other upstream 535799 49831067 ~ 49853671 (-)

Expression


Co-expression Network