G1182700 (LOC106606901)


Basic Information

Item Value
gene id G1182700
gene name LOC106606901
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49310100 ~ 49311267 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1348768
TGCCCTCGCTGTACTGGGTCCCGCCGAGGAAGCCATATTTGTCAGTGCGTCTAACAGCCAGGCCGTTGATCTCTGAGTCTGACCCGATAGAGCTTCCATCCTCCCCCAGGCCAGACAGAGACTCCAGGGTCCCTGACATCATGCTGGCTGACTCCAAGTAGCTGAGGGTGTCTGGGGCTGGGGCTCTGGGGtagggcagggagagggagacaggttccTGGATCACTGGGGGGCTGGGGTGCACTGCTCTGGAGGGGGTGTTGGGTAGCTCTGCCATTCTGGGAGATTGGCTTGAGGTCTCAGGTATAGGAGACAGGCTGGGGGTGTCCAGTTTGGGAGGGTTTGGGCTTTCTTCTGGTGGCAGACGATTTTGTGCTTCAGGGGCTGCAGCTGCTTGGGTGGAGTCTGGAGGAGGGGGAGTGTAAGTGGgggcaggaggagggagagattcCACCATAGACTGAGGCTGAGCATAATCAGTAGCAGGATTAGTGTTCACAGTGACATGAACACTGGGGTAGAGATTAGGGGTGAGATTAAGACAGGAGGAGGGGCTGGTAGTCTGCTGTGTTACCCCCTGTACCTCTTGCTCACTGTGGGCCTGTGTAGGGCCCTCTGAGGGGGCATTTAACAGCTGCTTGCCCCCTGGGTTACTCACTTCCTGCTTTACAGCCAACACTGGGCTGGCCCCTGCCCCCATGTATGTCTCCTTTACTCCCTCCCTCAGCCACAATGCTACATCTACAGGTAGGATGGCAGGAGTATCTAGGGCTATTACAGGTAAGGGGGCAGGTCTCTCTGGGGGTATTAGAGGTGGGGGCACTGGAGTCTCTGGAGTTAACGCTGATGAGACGCGTTTGGGGGGACTCGGTGGaggtcctctcccccctctcttggGAGACTTGGGAGAAGGAGGGTGAGAAGGAAGCATCTCTCCTGGTACAGTTAATGTCAGAGAAGCTTTGTCACCGTACAGAGAGGACTTGGGGATTGGGTTCTCCTTAGTGGGCTCTGGGGTGGTGCTgctgggaggagggggggcagtagAGGGTATGGGGAAGGAGGGGGCAGCATGTGTGTCACCTATAGCTGGAGGTGAGGGGATTAGGGCGGAGATTTCGGCCATAGCTCCTCCTTATTT

Function

NR:

description
TBC1 domain family member 10B-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1348768 True 1141 lncRNA 0.57 2 49310100 49311267

Neighbor

gene id symbol gene type direction distance location
LOC100136718 mlc-2 coding upstream 10849 49295336 ~ 49299251 (+)
LOC110486677 LOC106601591 coding upstream 25984 49281106 ~ 49284116 (+)
LOC110486678 NA coding upstream 43333 49263529 ~ 49266771 (+)
LOC110486670 LOC106606891 coding upstream 96681 49210465 ~ 49213419 (+)
LOC110486671 LOC100335037 coding upstream 107407 49198846 ~ 49202693 (+)
LOC110486684 LOC106601519 coding downstream 58971 49370238 ~ 49384522 (+)
LOC110486690 LOC106606872 coding downstream 211263 49522530 ~ 49530733 (+)
LOC110486693 rundc3a coding downstream 221753 49533020 ~ 49551503 (+)
LOC110486691 LOC106601608 coding downstream 240455 49551722 ~ 49557177 (+)
LOC110486695 LOC106601598 coding downstream 247521 49558788 ~ 49567825 (+)
G1182611 NA non-coding upstream 6469 49300201 ~ 49303631 (+)
G1182627 NA non-coding upstream 160176 49104102 ~ 49149924 (+)
G1182591 NA non-coding upstream 256083 49053596 ~ 49054017 (+)
G1182588 NA non-coding upstream 263415 49045076 ~ 49046685 (+)
G1182587 NA non-coding upstream 265323 49044482 ~ 49044777 (+)
G1182705 NA non-coding downstream 8536 49319803 ~ 49320131 (+)
G1182707 NA non-coding downstream 12671 49323938 ~ 49324173 (+)
G1182711 LOC106585476 non-coding downstream 39128 49350395 ~ 49352361 (+)
G1182724 NA non-coding downstream 52782 49364049 ~ 49365202 (+)
G1182725 NA non-coding downstream 74955 49386222 ~ 49388178 (+)
G1182629 NA other upstream 191403 49114975 ~ 49118697 (+)
G1182595 NA other upstream 244958 49063785 ~ 49065142 (+)
G1182742 NA other downstream 108303 49419570 ~ 49426223 (+)
ndua4 ndua4 other downstream 269059 49580324 ~ 49584562 (+)
G1183819 NA other downstream 520954 49832221 ~ 49835014 (+)
G1183875 NA other downstream 571554 49882821 ~ 49883435 (+)
G1184435 LOC106606845 other downstream 1674546 50985813 ~ 50986566 (+)

Expression


Co-expression Network