G1182711 (LOC106585476)


Basic Information

Item Value
gene id G1182711
gene name LOC106585476
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49350395 ~ 49352361 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1348781
GTCGTAGTCGGCAGCCTCCAGTAGGGCCTGCTCAGGCAGTTCCAGATCCAGGTAGACATCCTTCTCCTTCCTGCTGATGGCGTAGTAGCCCTCGCTCCTGGCACAGCCTGTCACGTGCTCCCGCAGCTGCCCGTCTGCACTCTTCTTCTTACGCCGCGGGTTGGGGATGTTGGTAAcaGTGTGGTGGACCCAGTGTGTGTCGTTGAGCCAGTCGGTGCTGTGGTCGTCCTGCAGCAGCTTCTCGTAGGTTGTCTTCAGCAGCGTCATGTCCTCCATGTCTAGACCAGAGTTCCAGATGTCGTACAGGATGGTCATCTGCTCAAACTCGCTGCGCTGGTCAAACGTGACGGGCTCCGGGGCAGGGATGGGCTTGGGCCAACGCTGCGACGAAGTCAACCCGGCCTCCTGGAGGAAGAGGCGCTCGCTCTTCCTCACATCGTCCCACTCTTCCTCGTCCTCCGTGTTAGACAGCTCACCCGGCTCCAGCTGCTCCACGTCCACATCCTCCTCCAGTTTCCTCTTCTGTTTCTTGGTCTGATGTTCCTTCTGCTTTTTCGTTTGCTGCAACTCCAGATTTTCCttatctttcctcctcctcttcttgttcttctctttccccatctcctcCAGTTCACTGCCCTTCGCCACCATTCCCTTCCTCTTGTCTGATGGGGTGAGAGATGTCAGCACAGAGGCCTTGGCCATGTCTCCATCCTCACACAGCAGCCCCATGCCAGACAGGTACTCAGCCTGGTGTCTGTCCCTAGAGGGCAGGGGTTCCCCTATGACCTCCTCAGGAGCTTCCAGCACCCCAGAGATGGCGTGATGGTTGAAGTCTGCAGGGAGGAGCACCCCAGACTCCTGTTTGGAGACACTCCTCTTTTGGGCAGGGATGAGGTGGAAGGGGGCTTTGGAATAGTTGTGCTCCTGCAGGGTAGACAGGCCCTGTGGGTCCATAACCAGGGAGAGGGCTTTGGGAGAGAGGagcatctcctcctccatcttctgcTCCTCTGCCTCGTCTGACGTCTCCGTCTCCTCTGAGTCTCCAGCATCTGGGGCCAGCTTCAGGGCCACATCAGCCAGGACAGACAGATCAGCCGTGGGGGCCGAGCCCAGCTGTAGCAGGCTGGATGCTCCCAGCTGC

Function

NR:

description
histone-lysine N-methyltransferase SETD1A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1348781 True 1147 lncRNA 0.59 3 49350395 49352361

Neighbor

gene id symbol gene type direction distance location
LOC100136718 mlc-2 coding upstream 51144 49295336 ~ 49299251 (+)
LOC110486677 LOC106601591 coding upstream 66279 49281106 ~ 49284116 (+)
LOC110486678 NA coding upstream 83628 49263529 ~ 49266771 (+)
LOC110486670 LOC106606891 coding upstream 136976 49210465 ~ 49213419 (+)
LOC110486671 LOC100335037 coding upstream 147702 49198846 ~ 49202693 (+)
LOC110486684 LOC106601519 coding downstream 17877 49370238 ~ 49384522 (+)
LOC110486690 LOC106606872 coding downstream 170169 49522530 ~ 49530733 (+)
LOC110486693 rundc3a coding downstream 180659 49533020 ~ 49551503 (+)
LOC110486691 LOC106601608 coding downstream 199361 49551722 ~ 49557177 (+)
LOC110486695 LOC106601598 coding downstream 206427 49558788 ~ 49567825 (+)
G1182707 NA non-coding upstream 26222 49323938 ~ 49324173 (+)
G1182705 NA non-coding upstream 30264 49319803 ~ 49320131 (+)
G1182700 LOC106606901 non-coding upstream 39128 49310100 ~ 49311267 (+)
G1182611 NA non-coding upstream 46764 49300201 ~ 49303631 (+)
G1182627 NA non-coding upstream 200471 49104102 ~ 49149924 (+)
G1182724 NA non-coding downstream 11688 49364049 ~ 49365202 (+)
G1182725 NA non-coding downstream 33861 49386222 ~ 49388178 (+)
G1182750 NA non-coding downstream 86617 49438978 ~ 49439207 (+)
G1182753 NA non-coding downstream 89364 49441725 ~ 49441944 (+)
G1182757 NA non-coding downstream 94094 49446455 ~ 49446770 (+)
G1182629 NA other upstream 231698 49114975 ~ 49118697 (+)
G1182595 NA other upstream 285253 49063785 ~ 49065142 (+)
G1182742 NA other downstream 67209 49419570 ~ 49426223 (+)
ndua4 ndua4 other downstream 227965 49580324 ~ 49584562 (+)
G1183819 NA other downstream 479860 49832221 ~ 49835014 (+)
G1183875 NA other downstream 530460 49882821 ~ 49883435 (+)
G1184435 LOC106606845 other downstream 1633452 50985813 ~ 50986566 (+)

Expression


Co-expression Network