G1183820 (LOC106601594)


Basic Information

Item Value
gene id G1183820
gene name LOC106601594
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49835104 ~ 49836400 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1350071
GGGATGACataggggtggggagagagaggggtgggatagcCTATCGGGATGACataggggtggggagagagaggggtgggatatGGGAGCATTGGGAAAGATTGGGACAAGGGTCCATACAGAAACAAATGGAAGATGCCCTTTTGAAAGTAGAGTGCTACCTCGCCTGAATGACAGTGTGCAGTAGTTCACGAAAACATTCATAGATGTTTGTAGGTGTTTTCTGTATTTAGCAAAGTAGGTAGCGAAATTAGAGGTTTGAGTTGAGGTAAACGTGTGTGATGATGTTAGGCGTGCAAGTTACTACTGTTTCTGTCGATGAATGCTTCATTACAGCACTCTAAATGTCAATGCCTCACTGTGCATACTGTATGTTTTGCATATATACGTTTTTACAGGGTACAGTAGTCTGGCTACAGCGAGGGGTTGTCTGGTGAGGCGTTGCAGCAAATTACATAAAAAGTTGAATCCAGCTCAATCTGGTGGCCCCTCACCCTACAGAGTCACTCCTCCCCtcgtccctcctctcaccctcctgtGTGTCCCCCTCTAGCCCGAGGGCAGGTAGGGCATCTCGTTGTGGTAGTTGTAGTCCGGGCAGACCTTCTGGACCAGGCGGTAGTCTGTACTGTAGAAGGAGATGTAGATACAGATGACCTTGAAGGGCTTGGAACAGATCCAGGAGACATGGCTCTGTGTCTGCTCCTGGAAGCAGGTCTTGGACGGGTCGTAGTTGCAGAGCGACGTGCGCTTGCTGCGGTCCACCTTCTCATAGTCCACGCGGCAGTTGAAGATCTTAGAGTCCTTGGGGTAGACCACGCTCTGGCGCTCCAGGTCAAACTCCACCGCCTTGACCGGCGGCACCAGGCTGACTGAGATGTTGCCCTGGCCCGTGGAGTTGTGGCGGAAGTAGACGCTGAACGTTCCGTTGCCATGGTCTACGATCTTGCCGGTAATCAGCAGGTTGAGGCGCACAGTCTTGATATTAGAGTAAAAGTCTCCCCAGCCAAACATCTTCTTGAACTTGCCCGTCTTGACGATGGGCCGGCGTTTGAcgcgggaggaagaggaggtgtctGGCTTCATCAGGTCACTACCCAGCATCTCCCAGAACTCCTGCTTGGAGAAGGGTATGGGTGAGCGGTAGGGCAGCTCCAGGGAGGTGGCATTGGCTGCCCGACTTTTACTCTGGAGCATCCAGCGACTCAGGGGGGAAAGGGGAGTCTGACTCCCCAGGAGACCCACCGTCTTAGAGGACGACCCGTCTGCTGAGGAGCTCTTGGGGCTTGGAGAGTCA
>TU1350075
GGGATGACataggggtggggagagagaggggtgggatagcCTATCGGGATGACataggggtggggagagagaggggtgggatatGGGAGCATTGGGAAAGATTGGGACAAGGGTCCATACAGAAACAAATGGAAGATGCCCTTTTGAAAGTAGAGTGCTACCTCGCCTGAATGACAGTGTGCAGTAGTTCACGAAAACATTCATAGATGTTTGTAGGTGTTTTCTGTATTTAGCAAAGTAGGTAGCGAAATTAGAGGTTTGAGTTGAGGTAAACGTGTGTGATGATGTTAGGCGTGCAAGTTACTACTGTTTCTGTCGATGAATGCTTCATTACAGCACTCTAAATGTCAATGCCTCACTGTGCATACTGTATGTTTTGCATATATACGTTTTTACAGGGTACAGTAGTCTGGCTACAGCGAGGGGTTGTCTGGTGAGGCGTTGCAGCAAATTACATAAAAAGTTGAATCCAGCTCAATCTGGTGGCCCCTCACCCTACAGAGTCACTCCTCCCCtcgtccctcctctcaccctcctgtGTGTCCCCCTCTAGCCCGAGGGCAGGTAGGGCATCTCGTTGTGGTAGTTGTAGTCCGGGCAGACCTTCTGGACCAGGCGGTAGTCTGTACTGTAGAAGGAGATGTAGATACAGATGACCTTGAAGGGCTTGGAACAGATCCAGGAGACATGGCTCTGTGTCTGCTCCTGGAAGCAGGTCTTGGACGGGTCGTAGTTGCAGAGCGACGTGCGCTTGCTGCGGTCCACCTTCTCATAGTCCACGCGGCAGTTGAAGATCTTAGAGTCCTTGGGGTAGACCACGCTCTGGCGCTCCAGGTCAAACTCCACCGCCTTGACCGGCGGCACCAGGCTGACTGAGATGTTGCCCTGGCCCGTGGAGTTGTGGCGGAAGTAGACGCTGAACGTTCCGTTGCCATGGTCTACGATCTTGCCGGTAATCAGCAGGTTGAGGCGCACAGTCTTGATATTAGAGTAAAAGTCTCCCCAGCCAAACATCTTCTTGAACTTGCCCGTCTTGACGATGGGCCGGCGTTTGAcgcgggaggaagaggaggtgtctGGCTTCATCAGGTCACTACCCAGCATCTCCCAGAACTCCTGCTTGGAGAAGGGTATGGGTGAGCGGTAGGGCAGCTCCAGGGAGGTGGCATTG
>TU1350074
ggtgggatatGGGAGCATTGGGAAAGATTGGGACAAGGGTCCATACAGAAACAAATGGAAGATGCCCTTTTGAAAGTAGAGTGCTACCTCGCCTGAATGACAGTGTGCAGTAGTTCACGAAAACATTCATAGATGTTTGTAGGTGTTTTCTGTATTTAGCAAAGTAGGTAGCGAAATTAGAGGTTTGAGTTGAGGTAAACGTGTGTGATGATGTTAGGCGTGCAAGTTACTACTGTTTCTGTCGATGAATGCTTCATTACAGCACTCTAAATGTCAATGCCTCACTGTGCATACTGTATGTTTTGCATATATACGTTTTTACAGGGTACAGTAGTCTGGCTACAGCGAGGGGTTGTCTGGTGAGGCGTTGCAGCAAATTACATAAAAAGTTGAATCCAGCTCAATCTGGTGGCCCCTCACCCTACAGAGTCACTCCTCCCCtcgtccctcctctcaccctcctgtGTGTCCCCCTCTAGCCCGAGGGCAGGTAGGGCATCTCGTTGTGGTAGTTGTAGTCCGGGCAGACCTTCTGGACCAGGCGGTAGTCTGTACTGTAGAAGGAGATGTAGATACAGATGACCTTGAAGGGCTTGGAACAGATCCAGGAGACATGGCTCTGTGTCTGCTCCTGGAAGCAGGTCTTGGACGGGTCGTAGTTGCAGAGCGACGTGCGCTTGCTGCGGTCCACCTTCTCATAGTCCACGCGGCAGTTGAAGATCTTAGAGTCCTTGGGGTAGACCACGCTCTGGCGCTCCAGGTCAAACTCCACCGCCTTGACCGGCGGCACCAGGCTGACTGAGATGTTGCCCTGGCCCGTGGAGTTGTGGCGGAAGTAGACGCTGAACGTTCCGTTGCCATGGTCTACGATCTTGCCGGTAATCAGCAGGTTGAGGCGCACAGTCTTGATATTAGAGTAAAAGTCTCCCCAGCCAAACATCTTCTTGAACTTGCCCGTCTTGACGATGGGCCGGCGTTTGAcgcgggaggaagaggaggtgtctGGCTTCATCAGGTCACTACCCAGCATCTCCCAGAACTCCTGCTTGGAGAAGGGTATGGGTGAGCGGTAGGGCAGCTCCAGGGAGGTGGCATTGGCTGCCCGACTTTTACTCTGGAGCATCCAGCGACTCAGGGGGGAAAGGGGAGTCTGACTCCCCAGGAGACCCACCGTCTTAGAGGACGACCCGTCTGCTGAGGAGCTCTTGGGGCTTGGAGAGTCA
>TU1350072
TAGGGCATCTCGTTGTGGTAGTTGTAGTCCGGGCAGACCTTCTGGACCAGGCGGTAGTCTGTACTGTAGAAGGAGATGTAGATACAGATGACCTTGAAGGGCTTGGAACAGATCCAGGAGACATGGCTCTGTGTCTGCTCCTGGAAGCAGGTCTTGGACGGGTCGTAGTTGCAGAGCGACGTGCGCTTGCTGCGGTCCACCTTCTCATAGTCCACGCGGCAGTTGAAGATCTTAGAGTCCTTGGGGTAGACCACGCTCTGGCGCTCCAGGTCAAACTCCACCGCCTTGACCGGCGGCACCAGGCTGACTGAGATGTTGCCCTGGCCCGTGGAGTTGTGGCGGAAGTAGACGCTGAACGTTCCGTTGCCATGGTCTACGATCTTGCCGGTAATCAGCAGGTTGAGGCGCACAGTCTTGATATTAGAGTAAAAGTCTCCCCAGCCAAACATCTTCTTGAACTTGCCCGTCTTGACGATGGGCCGGCGTTTGAcgcgggaggaagaggaggtgtctGGCTTCATCAGGTCACTACCCAGCATCTCCCAGAACTCCTGCTTGGAGAAGGGTATGGGTGAGCGGTAGGGCAGCTCCAGGGAGGTGGCATTGGCTGCCCGACTTTTACTCTGGAGCATCCAGCGACTCAGGGGGGAAAGGGGAGTCTGACTCCCCAGGAGACCCACCGTCTTAGAGGACGACCCGTCTGCTGAGGAGCTCTTGGGGCTTGGAGAGTCA
>TU1350076
TAGGGCATCTCGTTGTGGTAGTTGTAGTCCGGGCAGACCTTCTGGACCAGGCGGTAGTCTGTACTGTAGAAGGAGATGTAGATACAGATGACCTTGAAGGGCTTGGAACAGATCCAGGAGACATGGCTCTGTGTCTGCTCCTGGAAGCAGGTCTTGGACGGGTCGTAGTTGCAGAGCGACGTGCGCTTGCTGCGGTCCACCTTCTCATAGTCCACGCGGCAGTTGAAGATCTTAGAGTCCTTGGGGTAGACCACGCTCTGGCGCTCCAGGTCAAACTCCACCGCCTTGACCGGCGGCACCAGGCTGACTGAGATGTTGCCCTGGCCCGTGGAGTTGTGGCGGAAGTAGACGCTGAACGTTCCGTTGCCATGGTCTACGATCTTGCCGGTAATCAGCAGGTTGAGGCGCACAGTCTTGATATTAGAGTAAAAGTCTCCCCAGCCAAACATCTTCTTGAACTTGCCCGTCTTGACGATGGGCCGGCGTTTGAcgcgggaggaagaggaggtgtctGGCTTCATCAGGTCACTACCCAGCATCTCCCAGAACTCCTGCTTGGAGAAGGGTATGGGTGAGCGGTAGGGCAGCTCCAGGGAGGTGGCATTG

Function

NR:

description
neurexophilin-1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1350071 False 1297 lncRNA 0.53 1 49835104 49836400
TU1350075 False 1171 lncRNA 0.53 1 49835104 49836274
TU1350074 False 1223 lncRNA 0.53 1 49835178 49836400
TU1350072 False 732 lncRNA 0.57 1 49835669 49836400
TU1350076 True 606 lncRNA 0.57 1 49835669 49836274

Neighbor

gene id symbol gene type direction distance location
LOC118938084 NA coding upstream 35265 49799387 ~ 49799839 (+)
LOC110486697 spop coding upstream 121490 49607479 ~ 49713614 (+)
ndua4 ndua4 coding upstream 250551 49580324 ~ 49584562 (+)
LOC110486696 LOC106601597 coding upstream 257835 49571508 ~ 49577269 (+)
LOC110486695 LOC106601598 coding upstream 267279 49558788 ~ 49567825 (+)
LOC110486702 mien1 coding downstream 232492 50068892 ~ 50125626 (+)
LOC110486703 NA coding downstream 237205 50073605 ~ 50076256 (+)
LOC100136769 LOC100136769 coding downstream 242881 50079281 ~ 50090662 (+)
LOC110486704 ubtf coding downstream 254937 50091337 ~ 50113963 (+)
LOC110486708 LOC106606819 coding downstream 277968 50114368 ~ 50123426 (+)
G1183800 NA non-coding upstream 24944 49809951 ~ 49810160 (+)
G1183794 NA non-coding upstream 30105 49804776 ~ 49804999 (+)
G1183751 NA non-coding upstream 73213 49761692 ~ 49761891 (+)
G1183749 NA non-coding upstream 74378 49760514 ~ 49760726 (+)
G1183745 NA non-coding upstream 95506 49739134 ~ 49739598 (+)
G1183822 NA non-coding downstream 1835 49838235 ~ 49838511 (+)
G1183874 NA non-coding downstream 45949 49882349 ~ 49882668 (+)
G1183880 NA non-coding downstream 50863 49887263 ~ 49887488 (+)
G1183887 NA non-coding downstream 57685 49894085 ~ 49894301 (+)
G1183888 NA non-coding downstream 58621 49895021 ~ 49895970 (+)
G1183819 NA other upstream 90 49832221 ~ 49835014 (+)
G1182742 NA other upstream 408881 49419570 ~ 49426223 (+)
LOC110486677 LOC106601591 other upstream 551601 49281106 ~ 49284116 (+)
LOC110486678 NA other upstream 568333 49263529 ~ 49266771 (+)
G1183875 NA other downstream 46421 49882821 ~ 49883435 (+)
G1184435 LOC106606845 other downstream 1149413 50985813 ~ 50986566 (+)
LOC110487554 LOC106601638 other downstream 1547772 51384172 ~ 51394113 (+)
G1185436 NA other downstream 1609507 51445907 ~ 51446557 (+)
G1185521 NA other downstream 1791282 51627682 ~ 51628676 (+)

Expression


Co-expression Network