G1183890


Basic Information

Item Value
gene id G1183890
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49970762 ~ 49974534 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1350165
GTTTGCTTTTTCAATTTTATAGTGTATTTATATATTGTAACAACTCTAAgaaattcacatttacacaatgCATTTTACACTAATAGGTAAGTACATGTAACATTCAGCTTTTGGGGGGGGAGGGGTCTGAAATGTCTGTGGGGATTTATTATATCTTGGATATTACCATAGAGAATCACAGTGAATCCTCCTCATACATGGCATGTCTGTCCACAGCCTCTGGACAAACTGAACATGTAAAAACATACTGGTCATGCTCATCACATATTGCCACTTTTGCACTGTAGGTAGAGTATATTATGGTCTGTAAAATAGAACCACAGCAGATGGCATGTACGTAGGTGATGCTATATGGATTTCAACAACATTAGTAGTACGTTTTAACCTATGGCCTATACTTCCTGAAACCTTCATTAACACTCAAATGATGAAACAAAACACAGATCATACAACAAGTGAGAATAAAAACGGAAGAAGAAGAACAACAGAAAGTGTTCTGAACATAACTCAAACACACCTGACTCTGTACACAGGCACTTGTATAGCACAGTCTTTGAGTGTGCCTATTACATCTAATAAGTGCTAAAACAAGAAACCGTTTACAAAAAAATACTGATTTCAAAAAAGACAATAATATTCATAACAAAAACAATAGAAGAACATTGAATGTTTTGCATATTTATGTCTGTAACGTTATTCAGCTTTACATTCTTATATTATCTTCCTCCACTCTACCAGTGTCCCCTGCTGTGGAGGAACAGTACAGATTGAGTCATACTGTAGATTCTATATTGACACCTCTATTCACCTGTGAGACAGCACAGTGTTAGATTGGGCCCGTGGGGCCACCAGCCACAGTGAAAGGTTCAGTTGTTCACTAGTCGTTGATGACAGTCCCTCCTGTCAGTCAGTGGTATTATGCCAATCTGTTGGTCCACTGGGTCCTACTGCACTTCCATTGTGGAGCAACATGAATCACACTGCTGTCAATAATATTGTgtgaaacactgtgtgtgtgaagCCACTGGATATGTCACAAGGAGGCCCCCAGGGGGAATATAGTGTGGGTGTGTTGGTCTGTTTTCTATTCAAAAGCCTCAAAACTCACTACTATGAGAGCGTCTTCCCTACTGTATCTTTGCTACGCcagattatctctctctctctctctctctctctctctctctctgtgtctctctctctctcacacacacacaaaagtatctCTGCTAATATCTCTACTTTGCTATCTACCTACATCTAAATTTAAGCATCAAACCACACCAAAGGGACCCTGAGTAATCACATGTCCCTGGGAATCAAACCTGGACTTCAAAGCAGTACAGTTACAGTAAGCGTAGCTACATTGCTAACATCTAATACCTACTGCGTGTTCAGTATGCTGCGTATGCTTCAGATCACtattgtgatacagtaaaatgTCACTGCTCTCTCAGACACATGAGAGGTGAGTAATGGTAATGTCACATTGTTGCCACTTTAAAAGCgttctgtatgtctctgtgcAGTACATAACAGAGGGATTCAGATGAGAGCCAGCTGACTGAGTGAAGCTAAATGAACCTGAAATCCTGAGGTAATTATACCTGCCTGTCAGGAATGTCGCCCTAATGGCCCCTGTGTTTACACCCATGCCCCTACCATACTATACCGCAGCAGACACATTAGCGCCACCGCACACTCTTTAGCACACACACATATCtgcacgtgagtgtgtgtgtgcaagtgcttGTGTTTATTTCAGTGAGACGGAAGTCTCTGATGAGTGTCCCATGTCTCCACTCATTAGCAAGTACAATATAATGGATAATTAAGGGGAGTCTTGAGTATAGCCTACTATACAGTGtttgtatataaactgtataCTATTTCTAGACAACTCTCGTCAGGCTACCATGGAACAGCCTCGAATACTGATACTGCAGAGCCTCTTTCTGATGATGTTACAGTTCCATTTTTGGCAGTTGGACATCACATTATGCGTCAGGTCAATGAGTCAGGAATGTTAAATAGTCCAAAAATGCTCCTCACATTGCATATCACAGCTCCTGGGGTAATGGAGCTGCACTGCTGAGGAGGCCTTGTAACTCAAACCACTAAGAGAGGCGGATGCGCCACAAACAGACATGAGAGAAACATCTAGAATCTGTTAAATTCAAAGCATGAATCATTCCAACAGAATCCTGGAGTCCATGTTGGATGGAGAAAAGGAGTCAAGTGTGTCAGAAAACAGAGGAGGGATGGTGTATCATGTTGTGGTGACAGAATGATGGAATGATCCACAGCCAATGAGAATAGGAGAGCAGTAATCAGAGAAACAGTATAACAACAACACAAATGTGTCCGTCCCTGTACACCTTAggaatgtctgtgtctgtggtaaAGAAAAAGGATAGGATATTTTGGAATGGGCGACTAATGCTGCATTTAGACGAGGGACGCAGAAACCATCATACAAGAAGAAAGCAAGCCAGCACGACGGTATGGTTGCTGTGGTGATTTTGGTAAACAAACAGTGCAAATCAACATCCGGTAGAAAAGAACGCTACGACAGACAACAAAAGTTTTTATATTTTAACTCTGGTGGCATGTCCCGTCTACTGTGACCTCAACGGCATTTACCGTCGTGCTCTCATTGAAAACAATGACATCCGGACGCCGTCTACCTCGTACAATCTAAACGCAGCGTAACTGTACCCCCACTGAGTTGTGTTGAATAGATAACAGTTGGATACTATCAGACAGGTTCACATGGAGGATTACAACAAGCTGCTACTGCTGAGGTCTGAGAAGACAGTCTGGAGGTGTGACGGAGTCACTGAGAGACTACTGCAAGACTTGCCCCGAGAACACACTAGGATAGGATAGGtacagatggagggatggaaagagggacAGATAGTTAcacgctgagagagagagagtacagacaaggggagagaggggaaagagagtttATCTACCTCTGAGGCACAAACATTTGATAATGTGAGTGAGTAGGGGGGAATTGGGGGGTGGATGAATAATAATTTTAGCAAATGGTCAAAGGAAGTTGGCAGTGAACTTATTGGGACACAGGATGAAACTCCTTCATGGGATAACATACTAACACACTTTTCATAATGATTGGTCAACACCAGCTGACAGAAAAGACCAGGATATCTAACGCAGTGATGCTTCTTGGATTATGGGTGGTAGTGATATTGCAACTTTAGTGACTTGAGGCAGACAATTGGTGTTAGGGTTGGTGTTAGGGTTGGTgttagggtttgggtttgggttGGTGTTAGGGTTGGTGTTTGGCGTTGGTATTTGGCGTTGGTGTTAGGGTTGGTGTTTGGCGTTGGTGTTAGGGTTGGTACTGGCGGAGAGGTTTAGTGTTCAAAGACACACTGGCAGAGTTGGGTTCTGTGTAGAGATACTGAGTCAGCCTCTGATGCTCCAGTCTGTCCAATAAGGGTCCATACTGGGACAAGAGGCCAGTCAGAAACCAGTGGCCACACTCGGTGAAAAGGGACGATAATGTCGTCAACTTCCTTGTTGTATCCAAGAAGCCCACTCAGTCTGTACTCTTATACTGTATGTCCATTCCCACATCAAGGTTTCCATGGCAACcccacttccccctctcctccttttcctccttcctgtcagcggcttctcctcttcctcagacCTGGGGGGGAGGTGAGTCAGGTCCCC
>TU1350166
GTTTGCTTTTTCAATTTTATAGTGTATTTATATATTGTAACAACTCTAAgaaattcacatttacacaatgCATTTTACACTAATAGGTAAGTACATGTAACATTCAGCTTTTGGGGGGGGAGGGGTCTGAAATGTCTGTGGGGATTTATTATATCTTGGATATTACCATAGAGAATCACAGTGAATCCTCCTCATACATGGCATGTCTGTCCACAGCCTCTGGACAAACTGAACATGTAAAAACATACTGGTCATGCTCATCACATATTGCCACTTTTGCACTGTAGGTAGAGTATATTATGGTCTGTAAAATAGAACCACAGCAGATGGCATGTACGTAGGTGATGCTATATGGATTTCAACAACATTAGTAGTACGTTTTAACCTATGGCCTATACTTCCTGAAACCTTCATTAACACTCAAATGATGAAACAAAACACAGATCATACAACAAGTGAGAATAAAAACGGAAGAAGAAGAACAACAGAAAGTGTTCTGAACATAACTCAAACACACCTGACTCTGTACACAGGCACTTGTATAGCACAGTCTTTGAGTGTGCCTATTACATCTAATAAGTGCTAAAACAAGAAACCGTTTACAAAAAAATACTGATTTCAAAAAAGACAATAATATTCATAACAAAAACAATAGAAGAACATTGAATGTTTTGCATATTTATGTCTGTAACGTTATTCAGCTTTACATTCTTATATTATCTTCCTCCACTCTACCAGTGTCCCCTGCTGTGGAGGAACAGTACAGATTGAGTCATACTGTAGATTCTATATTGACACCTCTATTCACCTGTGAGACAGCACAGTGTTAGATTGGGCCCGTGGGGCCACCAGCCACAGTGAAAGGTTCAGTTGTTCACTAGTCGTTGATGACAGTCCCTCCTGTCAGTCAGTGGTATTATGCCAATCTGTTGGTCCACTGGGTCCTACTGCACTTCCATTGTGGAGCAACATGAATCACACTGCTGTCAATAATATTGTgtgaaacactgtgtgtgtgaagCCACTGGATATGTCACAAGGAGGCCCCCAGGGGGAATATAGTGTGGGTGTGTTGGTCTGTTTTCTATTCAAAAGCCTCAAAACTCACTACTATGAGAGCGTCTTCCCTACTGTATCTTTGCTACGCcagattatctctctctctctctctctctctctctctctctctgtgtctctctctctctcacacacacacaaaagtatctCTGCTAATATCTCTACTTTGCTATCTACCTACATCTAAATTTAAGCATCAAACCACACCAAAGGGACCCTGAGTAATCACATGTCCCTGGGAATCAAACCTGGACTTCAAAGCAGTACAGTTACAGTAAGCGTAGCTACATTGCTAACATCTAATACCTACTGCGTGTTCAGTATGCTGCGTATGCTTCAGATCACtattgtgatacagtaaaatgTCACTGCTCTCTCAGACACATGAGAGGTGAGTAATGGTAATGTCACATTGTTGCCACTTTAAAAGCgttctgtatgtctctgtgcAGTACATAACAGAGGGATTCAGATGAGAGCCAGCTGACTGAGTGAAGCTAAATGAACCTGAAATCCTGAGGTAATTATACCTGCCTGTCAGGAATGTCGCCCTAATGGCCCCTGTGTTTACACCCATGCCCCTACCATACTATACCGCAGCAGACACATTAGCGCCACCGCACACTCTTTAGCACACACACATATCtgcacgtgagtgtgtgtgtgcaagtgcttGTGTTTATTTCAGTGAGACGGAAGTCTCTGATGAGTGTCCCATGTCTCCACTCATTAGCAAGTACAATATAATGGATAATTAAGGGGAGTCTTGAGTATAGCCTACTATACAGTGtttgtatataaactgtataCTATTTCTAGACAACTCTCGTCAGGCTACCATGGAACAGCCTCGAATACTGATACTGCAGAGCCTCTTTCTGATGATGTTACAGTTCCATTTTTGGCAGTTGGACATCACATTATGCGTCAGGTCAATGAGTCAGGAATGTTAAATAGTCCAAAAATGCTCCTCACATTGCATATCACAGCTCCTGGGGTAATGGAGCTGCACTGCTGAGGAGGCCTTGTAACTCAAACCACTAAGAGAGGCGGATGCGCCACAAACAGACATGAGAGAAACATCTAGAATCTGTTAAATTCAAAGCATGAATCATTCCAACAGAATCCTGGAGTCCATGTTGGATGGAGAAAAGGAGTCAAGTGTGTCAGAAAACAGAGGAGGGATGGTGTATCATGTTGTGGTGACAGAATGATGGAATGATCCACAGCCAATGAGAATAGGAGAGCAGTAATCAGAGAAACAGTATAACAACAACACAAATGTGTCCGTCCCTGTACACCTTAggaatgtctgtgtctgtggtaaAGAAAAAGGATAGGATATTTTGGAATGGGCGACTAATGCTGCATTTAGACGAGGGACGCAGAAACCATCATACAAGAAGAAAGCAAGCCAGCACGACGGTATGGTTGCTGTGGTGATTTTGGTAAACAAACAGTGCAAATCAACATCCGGTAGAAAAGAACGCTACGACAGACAACAAAAGTTTTTATATTTTAACTCTGGTGGCATGTCCCGTCTACTGTGACCTCAACGGCATTTACCGTCGTGCTCTCATTGAAAACAATGACATCCGGACGCCGTCTACCTCGTACAATCTAAACGCAGCGTAACTGTACCCCCACTGAGTTGTGTTGAATAGATAACAGTTGGATACTATCAGACAGGTTCACATGGAGGATTACAACAAGCTGCTACTGCTGAGGTCTGAGAAGACAGTCTGGAGGTGTGACGGAGTCACTGAGAGACTACTGCAAGACTTGCCCCGAGAACACACTAGGATAGGATAGGtacagatggagggatggaaagagggacAGATAGTTAcacgctgagagagagagagtacagacaaggggagagaggggaaagagagtttATCTACCTCTGAGGCACAAACATTTGATAATGTGAGTGAGTAGGGGGGAATTGGGGGGTGGATGAATAATAATTTTAGCAAATGGTCAAAGGAAGTTGGCAGTGAACTTATTGGGACACAGGATGAAACTCCTTCATGGGATAACATACTAACACACTTTTCATAATGATTGGTCAACACCAGCTGACAGAAAAGACCAGGATATCTAACGCAGTGATGCTTCTTGGATTATGGGTGGTAGTGATATTGCAACTTTAGTGACTTGAGGCAGACAATTGGTGTTAGGGTTGGTGTTAGGGTTGGTgttagggtttgggtttgggttGGTGTTAGGGTTGGTGTTTGGCGTTGGTATTTGGCGTTGGTGTTAGGGTTGGTGTTTGGGTTGGTGTTTGGCGTTGGTGTTAGGGTTGGTACTGGCGGAGAGGTTTAGTGTTCAAAGACACACTGGCAGAGTTGGGTTCTGTGTAGAGATACTGAGTCAGCCTCTGATGCTCCAGTCTGTCCAATAAGGGTCCATACTGGGACAAGAGGCCAGTCAGAAACCAGTGGCCACACTCGGTGAAAAGGGACGATAATGTCGTCAACTTCCTTGTTGTATCCAAGAAGCCCACTCAGTCTGTACTCTTATACTGTATGTCCATTCCCACATCAAGGTTTCCATGGCAACcccacttccccctctcctccttttcctccttcctgtcagcggcttctcctcttcctcagacCTGGGGGGGAGGTGAGTCAGGTCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1350165 False 3723 lncRNA 0.43 2 49970762 49974534
TU1350166 True 3735 lncRNA 0.43 2 49970762 49974534

Neighbor

gene id symbol gene type direction distance location
LOC118938084 NA coding upstream 170923 49799387 ~ 49799839 (+)
LOC110486697 spop coding upstream 257148 49607479 ~ 49713614 (+)
ndua4 ndua4 coding upstream 386209 49580324 ~ 49584562 (+)
LOC110486696 LOC106601597 coding upstream 393493 49571508 ~ 49577269 (+)
LOC110486695 LOC106601598 coding upstream 402937 49558788 ~ 49567825 (+)
LOC110486702 mien1 coding downstream 94358 50068892 ~ 50125626 (+)
LOC110486703 NA coding downstream 99071 50073605 ~ 50076256 (+)
LOC100136769 LOC100136769 coding downstream 104747 50079281 ~ 50090662 (+)
LOC110486704 ubtf coding downstream 116803 50091337 ~ 50113963 (+)
LOC110486708 LOC106606819 coding downstream 139834 50114368 ~ 50123426 (+)
G1183891 NA non-coding upstream 30 49970497 ~ 49970732 (+)
G1183917 NA non-coding upstream 11473 49958778 ~ 49959289 (+)
G1183904 NA non-coding upstream 25033 49932390 ~ 49945729 (+)
G1183901 NA non-coding upstream 49235 49921145 ~ 49921527 (+)
G1183896 NA non-coding upstream 55111 49913515 ~ 49915651 (+)
G1183972 NA non-coding downstream 68186 50042720 ~ 50043002 (+)
G1183973 NA non-coding downstream 68604 50043138 ~ 50043347 (+)
G1183980 LOC106606868 non-coding downstream 89006 50063540 ~ 50064359 (+)
G1183875 NA other upstream 87327 49882821 ~ 49883435 (+)
G1183819 NA other upstream 135748 49832221 ~ 49835014 (+)
G1182742 NA other upstream 544539 49419570 ~ 49426223 (+)
LOC110486677 LOC106601591 other upstream 687259 49281106 ~ 49284116 (+)
G1184435 LOC106606845 other downstream 1011279 50985813 ~ 50986566 (+)
LOC110487554 LOC106601638 other downstream 1409638 51384172 ~ 51394113 (+)
G1185436 NA other downstream 1471373 51445907 ~ 51446557 (+)
G1185521 NA other downstream 1653148 51627682 ~ 51628676 (+)
G1185527 NA other downstream 1677079 51651613 ~ 51653770 (+)

Expression


Co-expression Network