G1183980 (LOC106606868)


Basic Information

Item Value
gene id G1183980
gene name LOC106606868
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50063540 ~ 50064359 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1350275
CCTAATAGAGATCTGGCAGTCTCTCTTTGTTTCTGCCTCCTCGTCAGTTCCTCAATCTTTCTCATCAGTTCCGTAACCTGAAATCCTGAGTTGCTTCTATTGTTGAGGACATGATACCTGTTGCCACACTTCTCCACAAGCCACTGGAGGGCCTCCCCCTCACTCTCAATGTGCTGCTCGATGGTTGTGTCTCCCAGCCAGTCCCCAAAGTTGAACAGGACGATGATGTGAGCCCAGACTGTGTCTGTGATGAGCTCTAGGTGCTCCTGCACAGCTCTCCTGTAGGTCTCTGTGAAGGACCGGTCCACACGTACCATCAGCAGGAGGGCATGTGGACCAGGGGAGCAAAgagatacactacacactatctcCTGTCTGTCAAAAACAGGACTATCCTGAGAGAAGTAATTCATCCACCAGCCTGGAGTGTCCACCACAGTGACTTGTCTCCCGGCAACATCCCCTGCTCCCACCATGCATTGCGCTGTTCTCCTTCTGACCTGAAAGCTTCCTCCTTGACCCAGGATGGTGTTTCCTGCTGAACTCTTCCCTGAGCCCCGAGCTCCAAGCAGCACGACTCTGATATCGGAGACATGACATGACTCCCCTGGTAGAAAAGGTAACAATGCAACATCATAATAGATAGTGCTTTACGCTGTCATTTTTTACAAGGAGCACATGGGCGCCTAAGTTGGAAAATGTAGGAGCACAAtgagaa

Function

NR:

description
uncharacterized protein LOC110486701

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1350275 True 718 lncRNA 0.51 2 50063540 50064359

Neighbor

gene id symbol gene type direction distance location
LOC118938084 NA coding upstream 263701 49799387 ~ 49799839 (+)
LOC110486697 spop coding upstream 349926 49607479 ~ 49713614 (+)
ndua4 ndua4 coding upstream 478987 49580324 ~ 49584562 (+)
LOC110486696 LOC106601597 coding upstream 486271 49571508 ~ 49577269 (+)
LOC110486695 LOC106601598 coding upstream 495715 49558788 ~ 49567825 (+)
LOC110486702 mien1 coding downstream 4533 50068892 ~ 50125626 (+)
LOC110486703 NA coding downstream 9246 50073605 ~ 50076256 (+)
LOC100136769 LOC100136769 coding downstream 14922 50079281 ~ 50090662 (+)
LOC110486704 ubtf coding downstream 26978 50091337 ~ 50113963 (+)
LOC110486708 LOC106606819 coding downstream 50009 50114368 ~ 50123426 (+)
G1183973 NA non-coding upstream 20193 50043138 ~ 50043347 (+)
G1183972 NA non-coding upstream 20538 50042720 ~ 50043002 (+)
G1183890 NA non-coding upstream 89006 49970762 ~ 49974534 (+)
G1183891 NA non-coding upstream 92808 49970497 ~ 49970732 (+)
G1183917 NA non-coding upstream 104251 49958778 ~ 49959289 (+)
G1184046 NA non-coding downstream 154693 50219052 ~ 50220138 (+)
G1184078 NA non-coding downstream 202664 50267023 ~ 50267498 (+)
G1183875 NA other upstream 180105 49882821 ~ 49883435 (+)
G1183819 NA other upstream 228526 49832221 ~ 49835014 (+)
G1182742 NA other upstream 637317 49419570 ~ 49426223 (+)
LOC110486677 LOC106601591 other upstream 780037 49281106 ~ 49284116 (+)
G1184435 LOC106606845 other downstream 921454 50985813 ~ 50986566 (+)
LOC110487554 LOC106601638 other downstream 1319813 51384172 ~ 51394113 (+)
G1185436 NA other downstream 1381548 51445907 ~ 51446557 (+)
G1185521 NA other downstream 1563323 51627682 ~ 51628676 (+)
G1185527 NA other downstream 1587254 51651613 ~ 51653770 (+)

Expression


Co-expression Network