G1184671 (LOC106601648)


Basic Information

Item Value
gene id G1184671
gene name LOC106601648
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50092216 ~ 50095111 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1351048
AAAATAATGTGTCACCTGTGAAAGTATCAACTGATAGTGTCTATCATAAAGAGAGGATATGCAGCTCACCTTCAGCTTCTTGCCCTTATAAGGGTTCTTGATGAAGTCTTGGGCATCAAAAATCAGCTCTGTTAATGTGCGAAATTTGCGGATCACTTTGGAGACCTCGTTCCACTTCTGTTTGCACATCTCTCCTGTGAATGAGTTGAAGGCCACCTTCTCCCAGTCCAGATGGGACTCCGACGTCTTGTACTTGGCCAGGTCCTTCTGGGGAAGATTGACTTTCATGGCCTCTAGCAGATTCAGAAGGTCGTCCTGCGTCCACACTTGATTGACTACTATGATCTCACCTTGGTCTTTAGTGGACGCGTCCATTTCTCCATTCATCTGTACTTTCTTTAACCGTGAAACGGTTCTATCCCCCCCGACTTTTCTTTCAGCTGTTGTTGAACACGGGGTAAAGCAGGTTTTGTAGCCGTGTGGCGAGGATGAGTCTTGAAGACTGAGGCACACGAATGAAGAAAAAGGGAAATAAATGGTAACAATCTTCGCTAATCTTCAGAATTGAAATGAGGATACATAACTACAATCTATCATCATTCACAAGGTTTCAATCCGCGGTTACATTGTATCAAATTTACAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1351048 True 643 lncRNA 0.44 4 50092216 50095111

Neighbor

gene id symbol gene type direction distance location
si:ch211-214j24.15 LOC106606868 coding downstream 24818 50059034 ~ 50067398 (-)
LOC110486699 LOC106601618 coding downstream 51883 49970722 ~ 50040333 (-)
LOC110486698 LOC106601594 coding downstream 238545 49831067 ~ 49853671 (-)
LOC118938314 NA coding downstream 550467 49537199 ~ 49544276 (-)
LOC110486692 LOC106606873 coding downstream 558626 49530771 ~ 49533590 (-)
LOC110486710 LOC106601657 coding upstream 28079 50123190 ~ 50127201 (-)
LOC110486707 asb16 coding upstream 32444 50127555 ~ 50130302 (-)
LOC110486713 NA coding upstream 535894 50631005 ~ 50633690 (-)
LOC110486716 LOC106601616 coding upstream 552323 50647434 ~ 50653284 (-)
LOC110486719 LOC105013088 coding upstream 595071 50690182 ~ 50697090 (-)
G1184668 LOC100136769 non-coding downstream 7500 50079143 ~ 50084716 (-)
G1184661 NA non-coding downstream 27028 50048786 ~ 50065188 (-)
G1184673 NA non-coding downstream 35980 50053593 ~ 50056236 (-)
G1184656 NA non-coding downstream 49098 50042788 ~ 50043118 (-)
G1184640 NA non-coding downstream 77533 50014251 ~ 50014683 (-)
G1184672 LOC106606818 non-coding upstream 8468 50103579 ~ 50105066 (-)
G1184782 NA non-coding upstream 209726 50304837 ~ 50305278 (-)
G1184896 NA non-coding upstream 399863 50494974 ~ 50495465 (-)
G1184958 NA non-coding upstream 507733 50602844 ~ 50603081 (-)
G1184963 NA non-coding upstream 512509 50607620 ~ 50607896 (-)
G1183706 NA other downstream 403760 49685338 ~ 49688456 (-)
LOC110486687 LOC106601611 other downstream 588206 49486817 ~ 49504819 (-)
setd1a LOC106585476 other downstream 735002 49346540 ~ 49361234 (-)
G1184986 NA other upstream 531536 50626647 ~ 50628539 (-)
LOC110485208 LOC106606837 other upstream 661527 50732097 ~ 50824433 (-)
G1185046 NA other upstream 685154 50780265 ~ 50781858 (-)
G1186080 NA other upstream 1226689 51321800 ~ 51323931 (-)
G1186075 NA other upstream 1257198 51352309 ~ 51373954 (-)

Expression


Co-expression Network