G1184672 (LOC106606818)


Basic Information

Item Value
gene id G1184672
gene name LOC106606818
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50103579 ~ 50105066 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1351049
tggacaaattagctagtaacagtaagctagctaaataggacaaattagctagcaagtgcaagctagctaaattgccatacatgttttatgcttttcgacctgtccccaaattaatgtaattggttcagagtttgttttgatattttaacctgagtgtcgtgatcacgtttggtgtggggggacaaaattaaTTTATGCACACGCGCGCAGCCAGTTTGGGTTCTGtgtcagtgtatgtaaacgtccaaattcaactgtatacagacacacacatacatgtagaAAAACAAACTTACACAAAGAAACCGGTTCATCTCGACTTCgtattctttctttctCTGCTCGCAGCGTTTCTGGTAGCCGTCCTTCTCGTTCTGTTTTAGCAGCTTCCACTGCTGGCTGCACATGACCATGCGCTCTGTACTGGGTACGTCCTTCATACTAGACATCAACTCAGCACAGAACATGGAGTAACCAttcGGGGGTGGTTTGTCTGGCCTGCCATCAGATTTGTCCTTCAGATGTCTCTCAGCCTTGGTAAGGGTGGACTTGACGATGTCCTCGTTGCTCATGTTGAGCTCTGGGTGAGTCTCAATGAAGCCCTTCATCACCTCCTCATATGCTTTGTGCATCTCCAGGGACTTGGCAATCCACTTGAGTCTCTTTTTGTCTGACAGCTGTGTCCACTGCTTCCCAAGACTGTCTTTAATGTCTTTGGTGGTCGCGTCTGCGTGTGTTTTGAGGAAGGCCTTCTTCTCGTGACTGTACCATAGCTGCTGAGGCGTCCTGGGTTTCTCTGGCACATTAGAACCTTTCTTTGCCATGCTCTCCACCAGGTCGGGATGGTCCTCCCTATAGTCACACAGAAACCCAATGactactgtgagagagagagacagctgcatgtgagctctcacatttttcaacatgttttttttacaaaaggaTAGACTTGCAGTTAGATAAACTTTGATTTTTTGGCAGGGACATATGCAGGATGCTATCCTCCACAG

Function

NR:

description
PREDICTED: nucleolar transcription factor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1351049 True 1013 lncRNA 0.45 5 50103579 50105066

Neighbor

gene id symbol gene type direction distance location
si:ch211-214j24.15 LOC106606868 coding downstream 36181 50059034 ~ 50067398 (-)
LOC110486699 LOC106601618 coding downstream 63246 49970722 ~ 50040333 (-)
LOC110486698 LOC106601594 coding downstream 249908 49831067 ~ 49853671 (-)
LOC118938314 NA coding downstream 561830 49537199 ~ 49544276 (-)
LOC110486692 LOC106606873 coding downstream 569989 49530771 ~ 49533590 (-)
LOC110486710 LOC106601657 coding upstream 18124 50123190 ~ 50127201 (-)
LOC110486707 asb16 coding upstream 22489 50127555 ~ 50130302 (-)
LOC110486713 NA coding upstream 525939 50631005 ~ 50633690 (-)
LOC110486716 LOC106601616 coding upstream 542368 50647434 ~ 50653284 (-)
LOC110486719 LOC105013088 coding upstream 585116 50690182 ~ 50697090 (-)
G1184671 LOC106601648 non-coding downstream 8468 50092216 ~ 50095111 (-)
G1184669 NA non-coding downstream 10509 50092560 ~ 50093070 (-)
G1184668 LOC100136769 non-coding downstream 18863 50079143 ~ 50084716 (-)
G1184661 NA non-coding downstream 38391 50048786 ~ 50065188 (-)
G1184673 NA non-coding downstream 47343 50053593 ~ 50056236 (-)
G1184782 NA non-coding upstream 199771 50304837 ~ 50305278 (-)
G1184896 NA non-coding upstream 389908 50494974 ~ 50495465 (-)
G1184958 NA non-coding upstream 497778 50602844 ~ 50603081 (-)
G1184963 NA non-coding upstream 502554 50607620 ~ 50607896 (-)
G1184964 NA non-coding upstream 502903 50607969 ~ 50608323 (-)
G1183706 NA other downstream 415123 49685338 ~ 49688456 (-)
LOC110486687 LOC106601611 other downstream 599569 49486817 ~ 49504819 (-)
setd1a LOC106585476 other downstream 746365 49346540 ~ 49361234 (-)
G1184986 NA other upstream 521581 50626647 ~ 50628539 (-)
LOC110485208 LOC106606837 other upstream 651572 50732097 ~ 50824433 (-)
G1185046 NA other upstream 675199 50780265 ~ 50781858 (-)
G1186080 NA other upstream 1216734 51321800 ~ 51323931 (-)
G1186075 NA other upstream 1247243 51352309 ~ 51373954 (-)

Expression


Co-expression Network