G1184363


Basic Information

Item Value
gene id G1184363
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50762961 ~ 50770488 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1350680
agtgatagatagacaataggtgggttgaggtagtaatagacagacagtaggtgggttgaggtagcgatagtgatagacagtaggtgggttgaggtagtgacagacagtaggtgggttgaggtagtgatagacagacagtaggtgggttaaggtagtgatagacagacagtaggtgggttgaggtagtgatagacagagagtaggtgggttgaggtagtgatagtgatggaccgttggtgggttgaggtagtgatagatagacagtaggtgggttgaggtagtgatagacagacagtaggtgggttgaggtagtgatagacagacagtaggtgggttgaggtagtgacagacagacagtaggtgggttgaggtagtgacagacagaccgtaggtgggttgaggtagtgatagacagaccgtaggtgggttgaggtagtgatagtgacagacagtaggtgggttgaggtagtgacagacagacagtaggtgggttgaggtagtgatagatagacagtaggtgggttgaggtagtgacagacagacagtaggtgggttgaggtagtgatagacagacagtaggtgggttgaggtagtgatagacagacagtaggtgggttgaggtagtgatagacagacagtaggtgggttgaggtagtgatagtgatggaccgttg
>TU1350682
agtgatagatagacaataggtgggttgaggtagtaatagacagacagtaggtgggttgaggtagcgatagtgatagacagtaggtgggttgaggtagtgacagacagtaggtgggttgaggtagtgatagacagacagtaggtgggttaaggtagtgatagacagacagtaggtgggttgaggtagtgatagacagagagtaggtgggttgaggtagtgatagtgatggaccgttggtgggttgaggtagtgatagatagacagtaggtgggttgaggtagtgatagacagacagtaggtgggttgaggtagtgatagacagacagtaggtgggttgaggtagtgacagacagacagtaggtgggttgaggtagtgacagacagaccgtaggtgggttgaggtagtgatagacagaccgtaggtgggttgaggtagtgatagtgacagacagtaggtgggttgaggtagtgacagacagacagtaggtgggttgaggtagtgatagatagacagtaggtgggttgaggtagtgacagacagacagtaggtgggttgaggtagtgatagacagacagtaggtgggttgaggtagtgatagacagacagtaggtgggttgaggtagtgatagacagacagtaggtgggttgaggtagtgatagtgatggaccgttg
>TU1350681
agtgatagatagacaataggtgggttgaggtagtaatagacagacagtaggtgggttgaggtagcgatagtgatagacagtaggtgggttgaggtagtgacagacagtaggtgggttgaggtagtgatagacagacagtaggtgggttaaggtagtgatagacagacagtaggtgggttgaggtagtgatagacagagagtaggtgggttgaggtagtgatagtgatggaccgttggtgggttgaggtagtgatagatagacagtaggtgggttgaggtagtgatagacagacagtaggtgggttgaggtagtgatagacagacagtaggtgggttgaggtagtgacagacagacagtaggtgggttgaggtagtgacagacagaccgtaggtgggttgaggtagtgatagacagaccgtaggtgggttgaggtagtgatagtgacagacagtaggtgggttgaggtagtgacagacagacagtaggtgggttgaggtagtgatagatagacagtaggtgggttgaggtagtgacagacagacagtaggtgggttgaggtagtgatagacagacagtaggtgggttgaggtagtgatagacagacagtaggtgggttgaggtagtgatagacagacagtaggtgggttgaggtagtgatagtgatggaccgttg

Function

NR:

description
Zgc:158327 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1350680 False 674 lncRNA 0.49 2 50762961 50770488
TU1350682 False 674 lncRNA 0.49 2 50764787 50770488
TU1350681 True 674 lncRNA 0.49 2 50767937 50770488

Neighbor

gene id symbol gene type direction distance location
LOC110486723 LOC106601660 coding upstream 43142 50715377 ~ 50719819 (+)
LOC110486722 LOC106606841 coding upstream 48518 50709612 ~ 50714443 (+)
LOC110486721 dnjb1 coding upstream 58663 50699063 ~ 50704298 (+)
LOC110486717 LOC108442215 coding upstream 72959 50682397 ~ 50690002 (+)
LOC110486718 LOC106606839 coding upstream 81171 50659213 ~ 50681790 (+)
dnm2a NA coding downstream 62316 50832804 ~ 50876302 (+)
LOC110486729 light coding downstream 115241 50885729 ~ 50894479 (+)
LOC110485209 LOC105013079 coding downstream 169086 50939574 ~ 50965217 (+)
LOC110486733 LOC106606838 coding downstream 221006 50991494 ~ 50992842 (+)
LOC110486735 LOC100380774 coding downstream 573890 51344378 ~ 51373991 (+)
G1184359 NA non-coding upstream 5060 50757508 ~ 50757901 (+)
G1184352 LOC106594965 non-coding upstream 16310 50746383 ~ 50746651 (+)
G1184338 NA non-coding upstream 38124 50724610 ~ 50724837 (+)
G1184337 NA non-coding upstream 41464 50721165 ~ 50721497 (+)
G1184326 NA non-coding upstream 54242 50707873 ~ 50708719 (+)
G1184367 NA non-coding downstream 8348 50778836 ~ 50787112 (+)
G1184368 NA non-coding downstream 14855 50785343 ~ 50786408 (+)
G1184369 NA non-coding downstream 15037 50785525 ~ 50787090 (+)
G1184427 NA non-coding downstream 155303 50925791 ~ 50926011 (+)
G1184441 NA non-coding downstream 174433 50944921 ~ 50946135 (+)
G1183875 NA other upstream 879526 49882821 ~ 49883435 (+)
G1183819 NA other upstream 927947 49832221 ~ 49835014 (+)
ndua4 ndua4 other upstream 1178399 49580324 ~ 49584562 (+)
G1182742 NA other upstream 1336738 49419570 ~ 49426223 (+)
LOC110486677 LOC106601591 other upstream 1479458 49281106 ~ 49284116 (+)
G1184435 LOC106606845 other downstream 215325 50985813 ~ 50986566 (+)
LOC110487554 LOC106601638 other downstream 613684 51384172 ~ 51394113 (+)
G1185436 NA other downstream 675419 51445907 ~ 51446557 (+)
G1185521 NA other downstream 857194 51627682 ~ 51628676 (+)
G1185527 NA other downstream 881125 51651613 ~ 51653770 (+)

Expression


Co-expression Network