G1185534 (LOC106606779)


Basic Information

Item Value
gene id G1185534
gene name LOC106606779
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51559721 ~ 51561367 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1351993
CCAGACCATTTAGAGGAGGTTTATTGTATTGTTAAAGACGTGCTCCGGAACTTTGGCGACttctaaatattttttaaacctcccgctttgggctggatgtgtcaatgtgtagttcatacaggCATAATCTATGAGCACAATTACTGTTTCACCTCAATTAAccacgaaatccctagtttgaaagcaactGTTTTCCTGGAAGCTGTGCTTCGCCATTCTCCTACATTTTCCCCCACCTGGGCCAGCCCCCTAACAATTCTAGTTCTAGctaatgagcttcagccccttaCCATTTGAGTGGCAGCTAACAAGATgcacacagcagagcgagagcaatgacATGGTGCACATGTGACGTAGTACGCCATTTCCGGGGACCACTTTTAGCTCGTGAgctctactttcagaactactggctaaaatgAATTCAAAAGTGCCAGAGAATATCAAGTTATTTGAAGTTTGTAGTGGCTGTTTAGAGAATCTCGGTTGCTGACCATGGCATCAATTATCACATCTCAGTATAGAGCACTACATACCAAATCAGTATCATTAATAAACTGTTAACAGTAATATATTCTATAAAGGAGACCCTTTAACATCATGTCATGTGTAGCTATAGTCCAGAGTGTTAATAGGCTTGGGCGCTATATAACACGTTAAACAGTGCGGAAGGTACTCTTATACACACATATCATCTTGTCAACATCCAATAAATATGTCCTTTTAGAGATTCTTGTTCAGCCATCTCATTATGTGTCCAGCAGTCATTGTCCTGCTAGTGTGAGTCCATTGGTCCATGACACATTAGGCCTTTGCTTGAGCTTGTGTCTGCTACTCCTGTGTCTCCGTCTCTGTCAGCGTCAGCTCCTGTGGTTCTGGGTCAGGTAGCTCCTGTGGTTCTGGGTCAGCTATCTCCTGTGGTTGAGCTACAATGCCTgtctttatttttattgtttCTACAAGATCTAAACTGTCCATCTTTATCTGTTCTACAatgcccccctcctcctctacggCTGCCGATGCCTTTtccttctcctcattctcctccgtCTTCAGAGGCATCCATGACTCTTTGTGCAGCCTCTCGTTATTCTCCACCCCCTGGACACCAGGGGGCACTGTGGCGGCCATAGCAGGCGGCAGGTGCTTGAACTCTTCATCGTTCACATCATAGTCCTTCATCTTATGGTCCAGGATCCACCAGCGACCCGCGAAGCCAACGTCCAGTACCCGCGTGTGGAGCTCCCTCCAGGGGATAGAGAGGTTGGAGCACTGGGCCTCGTAAAGACTGGCGTCCGGGTTGTAATCGGCGAAGTAGGTGAGTGAGACCACTCCCAGGCTGAGGTGACGTAACCTTCCCTCGTTACGAAGCTTCGTCAGCTTCTGCACGTGCCCATCCGATGTTCCACTGCGTATCCACGGCGTCAGGAGCCCGAGCTGATTGGCTGTATCCAGGACGGTGGTCTCGAAAGAGGCGTCGTCGGGGTTTGTGTAGATGCAGGTGCCGGCTCCACCCAGAAGGCTCAGGTAGATGGAAGCTTTGATTGGCCTCTCCCACGCGCCCACCACAATCTCACGACACGCCTCCTTGTAGTCTCTGGACATGCCGCTAAACCA

Function

NR:

description
mitochondrial import inner membrane translocase subunit Tim29-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1351993 True 1623 lncRNA 0.49 2 51559721 51561367

Neighbor

gene id symbol gene type direction distance location
LOC110486737 LOC106606772 coding upstream 155141 51394436 ~ 51404580 (+)
LOC110487554 LOC106601638 coding upstream 165608 51384172 ~ 51394113 (+)
LOC110486735 LOC100380774 coding upstream 185730 51344378 ~ 51373991 (+)
LOC110486733 LOC106606838 coding upstream 566879 50991494 ~ 50992842 (+)
LOC110485209 LOC105013079 coding upstream 594504 50939574 ~ 50965217 (+)
LOC110486745 LOC106601712 coding downstream 997 51562364 ~ 51566331 (+)
LOC110486751 LOC106606781 coding downstream 24879 51586246 ~ 51590496 (+)
LOC118938087 NA coding downstream 202214 51760793 ~ 51765924 (+)
LOC118938318 LOC106606767 coding downstream 222521 51783888 ~ 51823957 (+)
LOC118938088 NA coding downstream 279085 51840452 ~ 51852886 (+)
G1185510 NA non-coding upstream 5785 51553700 ~ 51553936 (+)
G1185509 NA non-coding upstream 6403 51553108 ~ 51553318 (+)
G1185507 NA non-coding upstream 8496 51550964 ~ 51551225 (+)
G1185505 NA non-coding upstream 10192 51549314 ~ 51549529 (+)
G1185501 NA non-coding upstream 15660 51543784 ~ 51544061 (+)
G1185564 carm1 non-coding downstream 12654 51574021 ~ 51576755 (+)
G1185578 NA non-coding downstream 42703 51604070 ~ 51720989 (+)
G1185623 NA non-coding downstream 170594 51731961 ~ 51736516 (+)
LOC110486748 NA non-coding downstream 218030 51779397 ~ 51941040 (+)
G1185538 NA non-coding downstream 301226 51862593 ~ 51864290 (+)
G1185436 NA other upstream 113164 51445907 ~ 51446557 (+)
G1184435 LOC106606845 other upstream 573155 50985813 ~ 50986566 (+)
G1183875 NA other upstream 1676286 49882821 ~ 49883435 (+)
G1183819 NA other upstream 1724707 49832221 ~ 49835014 (+)
G1185521 NA other downstream 66315 51627682 ~ 51628676 (+)
G1185527 NA other downstream 90246 51651613 ~ 51653770 (+)
G1185522 NA other downstream 132516 51693883 ~ 51695058 (+)
G1185535 NA other downstream 136509 51697876 ~ 51698646 (+)
G1185616 NA other downstream 156381 51717748 ~ 51718204 (+)

Expression


Co-expression Network