G1185564 (carm1)


Basic Information

Item Value
gene id G1185564
gene name carm1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51574021 ~ 51576755 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1352024
tatcatggatggtcaatccttgcatccatagctcagtctatgaatttgagagtggttacatttctccagcccatcCCTCCACTTTTTACATAAAGGGCGGGGAatttgctttgttattgtttcaacttcTGATTGCTGCTTTAAGGTTATTTTTAGACACTAGAAGGAATTATGTAGTATTTTTGCTGATGTAGAAAATTCAAAATTGGAAGTAGCCCCATATTAGAGAAGTAGGACATCCCTACATTCAGTAACATGTATCTACGCATCTCAATTCTCAACTCAATCTATGAATAACAATTCATTAATAAATATATGAGGGAataacagacacagacagacggcACACAGACCTGTACAAATCCTCCTCTTTGGCCTCCAGGAAGTTGACTGTGTATTTGACAGACTTGGCCATCAAGATACGGATATCAAATGTGtcCACAATGGGCTGGCGAAAGTACTCATCCACCGCTGCTCCTCGCAGGGCTGAGAGGTCCACACCATGGAAGGAAGGCTGGTACCAGAAGTTGGCCTTGGTGAACTGCTCCATGTAGAGCTGTTCGTCTGTGAAG

Function

symbol description
carm1 Predicted to enable several functions, including lysine-acetylated histone binding activity; nuclear receptor coactivator activity; and protein-arginine N-methyltransferase activity. Acts upstream of or within regulation of skeletal muscle fiber development. Predicted to be located in cytosol and nucleus. Is expressed in nervous system; segmental plate; shield; and somite. Orthologous to human CARM1 (coactivator associated arginine methyltransferase 1).

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1352024 True 572 lncRNA 0.42 3 51574021 51576755

Neighbor

gene id symbol gene type direction distance location
LOC110486745 LOC106601712 coding upstream 7690 51562364 ~ 51566331 (+)
LOC110486737 LOC106606772 coding upstream 169441 51394436 ~ 51404580 (+)
LOC110487554 LOC106601638 coding upstream 179908 51384172 ~ 51394113 (+)
LOC110486735 LOC100380774 coding upstream 200030 51344378 ~ 51373991 (+)
LOC110486733 LOC106606838 coding upstream 581179 50991494 ~ 50992842 (+)
LOC110486751 LOC106606781 coding downstream 9491 51586246 ~ 51590496 (+)
LOC118938087 NA coding downstream 186826 51760793 ~ 51765924 (+)
LOC118938318 LOC106606767 coding downstream 207133 51783888 ~ 51823957 (+)
LOC118938088 NA coding downstream 263697 51840452 ~ 51852886 (+)
LOC110486748 NA coding downstream 359287 51779397 ~ 51941040 (+)
G1185534 LOC106606779 non-coding upstream 12654 51559721 ~ 51561367 (+)
G1185510 NA non-coding upstream 20085 51553700 ~ 51553936 (+)
G1185509 NA non-coding upstream 20703 51553108 ~ 51553318 (+)
G1185507 NA non-coding upstream 22796 51550964 ~ 51551225 (+)
G1185505 NA non-coding upstream 24492 51549314 ~ 51549529 (+)
G1185578 NA non-coding downstream 27315 51604070 ~ 51720989 (+)
G1185623 NA non-coding downstream 155206 51731961 ~ 51736516 (+)
G1185538 NA non-coding downstream 285838 51862593 ~ 51864290 (+)
G1185714 NA non-coding downstream 348334 51925089 ~ 51930454 (+)
G1185436 NA other upstream 127464 51445907 ~ 51446557 (+)
G1184435 LOC106606845 other upstream 587455 50985813 ~ 50986566 (+)
G1183875 NA other upstream 1690586 49882821 ~ 49883435 (+)
G1183819 NA other upstream 1739007 49832221 ~ 49835014 (+)
G1185521 NA other downstream 50927 51627682 ~ 51628676 (+)
G1185527 NA other downstream 74858 51651613 ~ 51653770 (+)
G1185522 NA other downstream 117128 51693883 ~ 51695058 (+)
G1185535 NA other downstream 121121 51697876 ~ 51698646 (+)
G1185616 NA other downstream 140993 51717748 ~ 51718204 (+)

Expression


Co-expression Network