G1186274


Basic Information

Item Value
gene id G1186274
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51731936 ~ 51736473 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1352828
tggagtctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttctgcaaggaggaatgggaaaaaatgtcagtctctcgatgtgcaaaactgatagagacataccccaagcgacttacagctgtaatcgcagcaaaaggtggcgctacaaagtattaacttaagggggctgaataattttgcacgcccaatttttcagtttttg
>TU1352829
tggagtctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttgacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatgggaaaaaatgtcagtctctcgatgtgcaaaactgatagagacataccccaagcgacttacagctgtaatcgcagcaaaaggtggcgctacaaagtattaacttaagggggctgaataattttgcacgcccaatttttcagtttttg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1352828 False 390 lncRNA 0.42 2 51731936 51736473
TU1352829 True 390 lncRNA 0.42 2 51731936 51736473

Neighbor

gene id symbol gene type direction distance location
LOC110486749 LOC106601716 coding downstream 124934 51592159 ~ 51607002 (-)
LOC110486760 LOC101074561 coding downstream 146345 51581861 ~ 51585591 (-)
carm1 carm1 coding downstream 150731 51566960 ~ 51581205 (-)
timm29 LOC106606779 coding downstream 169471 51559667 ~ 51562465 (-)
LOC118938317 NA coding downstream 201175 51526614 ~ 51530761 (-)
LOC118938556 NA coding upstream 364412 52100885 ~ 52101957 (-)
LOC110485216 NA coding upstream 419167 52155640 ~ 52331576 (-)
LOC110538721 NA coding upstream 450084 52186557 ~ 52189703 (-)
LOC110486769 gtf2f1 coding upstream 678846 52415319 ~ 52430034 (-)
LOC110486776 LOC106606809 coding upstream 993905 52730378 ~ 52741555 (-)
G1186222 NA non-coding downstream 78877 51630788 ~ 51653059 (-)
G1186224 NA non-coding downstream 82423 51631694 ~ 51649513 (-)
G1186085 NA non-coding downstream 103503 51627731 ~ 51628433 (-)
G1186214 NA non-coding downstream 105495 51625662 ~ 51626441 (-)
G1186283 NA non-coding upstream 5991 51742464 ~ 51814468 (-)
G1186311 LOC106606764 non-coding upstream 56432 51792905 ~ 51799214 (-)
G1186313 NA non-coding upstream 59892 51796365 ~ 51802602 (-)
G1186312 LOC106606767 non-coding upstream 60320 51796793 ~ 51806020 (-)
G1186082 NA non-coding upstream 100851 51837324 ~ 51850988 (-)
G1186154 NA other downstream 241695 51489777 ~ 51490241 (-)
G1186075 NA other downstream 357982 51352309 ~ 51373954 (-)
G1186080 NA other downstream 408005 51321800 ~ 51323931 (-)
G1185046 NA other downstream 950078 50780265 ~ 50781858 (-)
LOC110485208 LOC106606837 other downstream 973892 50732097 ~ 50824433 (-)
G1186381 NA other upstream 188490 51924963 ~ 52030660 (-)
G1186216 NA other upstream 274217 52010690 ~ 52011211 (-)
G1186670 LOC100194703 other upstream 922858 52659331 ~ 52659809 (-)
mosmoa C20H16orf52 other upstream 1870551 53607021 ~ 53638313 (-)
si:ch73-374l24.1 LOC105026133 other upstream 2070171 53806640 ~ 54049592 (-)

Expression


Co-expression Network