G1186082


Basic Information

Item Value
gene id G1186082
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51837324 ~ 51850988 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1352618
GTGTATTTATCAGCATTAAATTAACTATGGGGGTGTTGAATTTATGACCATGGAGTGTGCCATTTAGAGTCAAATCGTTTAGAAATCAACACCACAACTTTTAAACTGAAAAAAAACCTACACCCAACTTGCTGTGTATTTGTTGAAAATTAGTATGTAAGATGTTTTTGTCCAGGTCTTCCATTGAGCTGTTGCACTGTGCCTCCAGTTTTTGCACAATAATACACAGCTGTGTCCTCAGCCTGCAGACTGGTGATGTCtaagtacagtacattactacTGTCTCTGGAGATGGTGAATCTGCTCTTAAAAGAGGCCCCAGAGTTGATGGATCCACCACCCCAGATGATCCCAATCCACTCCAGTGTTTTCCCTGGCTGCTGTCGTATCCAAGCTGTGCCATAGTCTGTCAGGACATAGCCAGAGACTTGGCAAGATAGTTTCACTGACTCTCCAGGAGGTTTGAGTTGAGCAGGGGAGGAGGTCAAACTAATGCTGTGTATATCTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1352618 True 508 lncRNA 0.43 2 51837324 51850988

Neighbor

gene id symbol gene type direction distance location
LOC110486749 LOC106601716 coding downstream 230322 51592159 ~ 51607002 (-)
LOC110486760 LOC101074561 coding downstream 251733 51581861 ~ 51585591 (-)
carm1 carm1 coding downstream 256119 51566960 ~ 51581205 (-)
timm29 LOC106606779 coding downstream 274859 51559667 ~ 51562465 (-)
LOC118938317 NA coding downstream 306563 51526614 ~ 51530761 (-)
LOC118938556 NA coding upstream 249897 52100885 ~ 52101957 (-)
LOC110485216 NA coding upstream 304652 52155640 ~ 52331576 (-)
LOC110538721 NA coding upstream 335569 52186557 ~ 52189703 (-)
LOC110486769 gtf2f1 coding upstream 564331 52415319 ~ 52430034 (-)
LOC110486776 LOC106606809 coding upstream 879390 52730378 ~ 52741555 (-)
G1186283 NA non-coding downstream 22856 51742464 ~ 51814468 (-)
G1186312 LOC106606767 non-coding downstream 31304 51796793 ~ 51806020 (-)
G1186313 NA non-coding downstream 34722 51796365 ~ 51802602 (-)
G1186311 LOC106606764 non-coding downstream 38110 51792905 ~ 51799214 (-)
G1186274 NA non-coding downstream 100851 51731936 ~ 51736473 (-)
G1186348 NA non-coding upstream 18310 51869298 ~ 51874029 (-)
G1186217 NA non-coding upstream 78220 51929208 ~ 51929850 (-)
G1186398 NA non-coding upstream 120709 51971697 ~ 51977351 (-)
G1186438 NA non-coding upstream 242372 52093360 ~ 52093778 (-)
G1186446 LOC106601675 non-coding upstream 254801 52105789 ~ 52106669 (-)
G1186154 NA other downstream 347083 51489777 ~ 51490241 (-)
G1186075 NA other downstream 463370 51352309 ~ 51373954 (-)
G1186080 NA other downstream 513393 51321800 ~ 51323931 (-)
G1185046 NA other downstream 1055466 50780265 ~ 50781858 (-)
LOC110485208 LOC106606837 other downstream 1079280 50732097 ~ 50824433 (-)
G1186381 NA other upstream 73975 51924963 ~ 52030660 (-)
G1186216 NA other upstream 159702 52010690 ~ 52011211 (-)
G1186670 LOC100194703 other upstream 808343 52659331 ~ 52659809 (-)
mosmoa C20H16orf52 other upstream 1756036 53607021 ~ 53638313 (-)
si:ch73-374l24.1 LOC105026133 other upstream 1955656 53806640 ~ 54049592 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026532 ighv13-2 coding NC_007114.7 CM002887.2 34031577 ~ 34032019 (-)