G1186398


Basic Information

Item Value
gene id G1186398
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51971697 ~ 51977351 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1352985
gacttattacggggtccttgaatgagctatcggacagaaatgttTGGGTCCATCTATATGGGCTGAAGcggtcgcaatgcacctagtcttgcgactctgggacatttctaaatgtcatcATTTTTGTGAtgtaaaaatgaattgaagttattgcaaatgtacgaggctgtttctcggtccgagaaccttctagagccacataactcaccacgcactatcgacctgagttctagaacaggtttctaaaatttcagaactctaggtctgacggttctttaataGTTCGAACAAagttaactattgcaggcactgtctgtctctacgcaccccaatatgtctctccttccaagctgtgtgtgtgtgtgatttagttctTCTTGGAAATTTTATGGGAGacattactgatttacagttcatgagggttgcctaatcacacatatgaagttttggaaagatctgattTTTTAACCCTTAGAAACAGCcgctgtgacaccaattatggcacttccggttgggacAGGAAGCTAAAAGTAAagacatatcctcattggggtatgcttttacagaatcctgagttttaagtgtttaagTGAACTGACCGATttagggttgaatgcactatttatcacaaactgctgcttgggtatggaaaaacacttttagggtgattttaaccacttccggttgctccaggaagtttagaatcaacacaggtagacctcatagtggcctgatggattgtaaTTGAAGacaggcattcataacccacatagccttcaggttgactttagaggaaaaggcaatgtattcctatggggagagatgtcattgtaatctgtgagatcaaaaaaccctgactaactgttaagggttaatgccacacgatCAAggtttgcacagatcgggaggacttCAGGAACGTAcgtgaggtcgaattgtgcttttCACTCTAaaggttctctcactgtcacccaaaagcaaatgacaattagggccaggcttcattttgggcctacttttttcacggtcactgcactcagagcgagctacggtcaagcggggaatcttgttgaactcggcacggccttgaGAAAATGGAagtgccattgcaggctctgtgtgtctttaatcAGTTGTAACAGAGTAATCATCAACTGAccctaattagcataacgcaacgcacataaatattact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1352985 True 1195 lncRNA 0.42 2 51971697 51977351

Neighbor

gene id symbol gene type direction distance location
LOC110486749 LOC106601716 coding downstream 364695 51592159 ~ 51607002 (-)
LOC110486760 LOC101074561 coding downstream 386106 51581861 ~ 51585591 (-)
carm1 carm1 coding downstream 390492 51566960 ~ 51581205 (-)
timm29 LOC106606779 coding downstream 409232 51559667 ~ 51562465 (-)
LOC118938317 NA coding downstream 440936 51526614 ~ 51530761 (-)
LOC118938556 NA coding upstream 123534 52100885 ~ 52101957 (-)
LOC110485216 NA coding upstream 178289 52155640 ~ 52331576 (-)
LOC110538721 NA coding upstream 209206 52186557 ~ 52189703 (-)
LOC110486769 gtf2f1 coding upstream 437968 52415319 ~ 52430034 (-)
LOC110486776 LOC106606809 coding upstream 753027 52730378 ~ 52741555 (-)
G1186217 NA non-coding downstream 41847 51929208 ~ 51929850 (-)
G1186348 NA non-coding downstream 97668 51869298 ~ 51874029 (-)
G1186082 NA non-coding downstream 120709 51837324 ~ 51850988 (-)
G1186283 NA non-coding downstream 157229 51742464 ~ 51814468 (-)
G1186312 LOC106606767 non-coding downstream 165677 51796793 ~ 51806020 (-)
G1186438 NA non-coding upstream 116009 52093360 ~ 52093778 (-)
G1186446 LOC106601675 non-coding upstream 128438 52105789 ~ 52106669 (-)
G1186457 NA non-coding upstream 135297 52112648 ~ 52112958 (-)
G1186460 NA non-coding upstream 140087 52117438 ~ 52117650 (-)
G1186467 NA non-coding upstream 165546 52142897 ~ 52144110 (-)
G1186154 NA other downstream 481456 51489777 ~ 51490241 (-)
G1186075 NA other downstream 597743 51352309 ~ 51373954 (-)
G1186080 NA other downstream 647766 51321800 ~ 51323931 (-)
G1185046 NA other downstream 1189839 50780265 ~ 50781858 (-)
LOC110485208 LOC106606837 other downstream 1213653 50732097 ~ 50824433 (-)
G1186216 NA other upstream 33339 52010690 ~ 52011211 (-)
G1186670 LOC100194703 other upstream 681980 52659331 ~ 52659809 (-)
mosmoa C20H16orf52 other upstream 1629673 53607021 ~ 53638313 (-)
si:ch73-374l24.1 LOC105026133 other upstream 1829293 53806640 ~ 54049592 (-)
G1188147 NA other upstream 2471532 54448883 ~ 54450020 (-)

Expression


Co-expression Network