G1186467


Basic Information

Item Value
gene id G1186467
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52142897 ~ 52144110 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1353078
gtgtttatacttgcgtactattgacccactggaattgtgatacagtgaattataagtgaaataatctgtctgtaaacaattgttggaaaaatgacctgtgtcatgcacaaagtagatgtcctaaccgacttgccaaaactatagttaacaagaaaattgtggagtggttgaaaaacaagctttaatgaccccaacctaagtgtatgtatacttctgacttcaactgtatgctgagcacttgttggctgcttttccttcacacagAAAGTAGAGGTTTTTACACTTGGAACCGGCAGGTTTGCTCGACCTTATTTATGGTTTCCACGCACATAAAAGTGGTGGAAATGAGGGAATTAGTGAAGGTATACAGCATATCTGCAAAAACACCTCCACCACACCTTCATTTCTTACATCTCCACCCAGAATGAATTGCAGGTGCTAttctcattcaattcaaggtcAGAAAAAGCATAGAGAAAAAAGTGCATACAAAGGGAATTCCATTCCATTTACATGCGCTTAACTTGGTTCGGAATCGGCCCCCAGCAGCGAAAAAACAAACACCCATTTTCAAACCCTCATGAAAGCAGCTCCAGGCAGCCCCTTATTGCCGTTTCACACTGTCTTTTTGTCTGATTATCCGACCAGAATCTTGGTCCAGATGCATGGGCCAGTCGTGCAGTCATGCCCAGATTGTGATTGGGGTGGTCAGGCCGATGCCCCTGCATGCCACTAGGAGAACAGTGTCCCATGTCTGACTGTACTCCACAGCTGCCAGGGTGGCACAATAGaccctctctctcaattttcCCTAGGTGAACAACAAAAGTGATACATTGTACCCATTCCTAACGTAATTTCATGACCGGGAAATAGTGTTTGTCCTGCGTCCCATTCTTTACAGCAGCGTAACCTCCTGGAAatataacctgtgtgtgtgtgtgtgtgagagagagagcgagagaatagcGATGACACAGCGTGCTTCCGACTCATCACACCCATTGCCGTTTCCTCCCCACACACTCCATGGGGCAATATTCTTACTACCCTTGTTTCTTTAGTCACGCGGACTCCATACCACACCCACATCCGCCCAACCACTGGGTACAGATGTCAGCTTAACGTTCATTTTTTATTTacgtttggttgagttgtcaactaacgtgaattcaacaaaAATGTGACCATGTCATCAGGATTTAAGTTAAACG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1353078 True 1214 lncRNA 0.44 1 52142897 52144110

Neighbor

gene id symbol gene type direction distance location
LOC118938556 NA coding downstream 40940 52100885 ~ 52101957 (-)
LOC110486749 LOC106601716 coding downstream 535895 51592159 ~ 51607002 (-)
LOC110486760 LOC101074561 coding downstream 557306 51581861 ~ 51585591 (-)
carm1 carm1 coding downstream 561692 51566960 ~ 51581205 (-)
timm29 LOC106606779 coding downstream 580432 51559667 ~ 51562465 (-)
LOC110485216 NA coding upstream 11530 52155640 ~ 52331576 (-)
LOC110538721 NA coding upstream 42447 52186557 ~ 52189703 (-)
LOC110486769 gtf2f1 coding upstream 271209 52415319 ~ 52430034 (-)
LOC110486776 LOC106606809 coding upstream 586268 52730378 ~ 52741555 (-)
LOC110485222 LOC106601739 coding upstream 949556 53093666 ~ 53107919 (-)
G1186460 NA non-coding downstream 25247 52117438 ~ 52117650 (-)
G1186457 NA non-coding downstream 29939 52112648 ~ 52112958 (-)
G1186446 LOC106601675 non-coding downstream 36228 52105789 ~ 52106669 (-)
G1186438 NA non-coding downstream 49119 52093360 ~ 52093778 (-)
G1186398 NA non-coding downstream 165546 51971697 ~ 51977351 (-)
G1186481 NA non-coding upstream 62752 52206862 ~ 52214888 (-)
G1186535 NA non-coding upstream 180275 52324385 ~ 52399386 (-)
G1186547 NA non-coding upstream 203514 52347624 ~ 52370137 (-)
G1186536 NA non-coding upstream 244708 52388818 ~ 52393251 (-)
G1186381 NA other downstream 112237 51924963 ~ 52030660 (-)
G1186216 NA other downstream 131686 52010690 ~ 52011211 (-)
G1186154 NA other downstream 652656 51489777 ~ 51490241 (-)
G1186075 NA other downstream 768943 51352309 ~ 51373954 (-)
G1186080 NA other downstream 818966 51321800 ~ 51323931 (-)
G1186670 LOC100194703 other upstream 515221 52659331 ~ 52659809 (-)
mosmoa C20H16orf52 other upstream 1462914 53607021 ~ 53638313 (-)
si:ch73-374l24.1 LOC105026133 other upstream 1662534 53806640 ~ 54049592 (-)
G1188147 NA other upstream 2304773 54448883 ~ 54450020 (-)
G1188127 LOC106601757 other upstream 2321423 54409911 ~ 54470838 (-)

Expression


Co-expression Network