G1186562


Basic Information

Item Value
gene id G1186562
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52400944 ~ 52402441 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1353201
ggaccaaatcagagagataggtaggtgaaatgtacagctgtgtgtcatccgcatagcagtgaaagttaacattatgttttcgaataacatccccaagaggtaaaatatatagtgaaaacaatagtggtcctaaaacggaaccttgaggaacaccgaaatttacagttgatttgtcagaggacaaaccattcacagagacaaactgatatctttccgacagataagatcgcaaccaggccagaacttgtccgtgtagaccaatttgggtttccaatctctccaaaagaatgtggtgatcgatggtatcaaaagcagcagtaaggtctaggagcacgaggacagatgcagagcctcggtccgatgccattaaaatgtaatttaccaccttcacaagtgccgtctcagtgctatgatggggtctaaaaccagactgaagcatttcgtatacattgtttgtcttcaggaaggcagtgagttgttgcgcaacagccttttctaaaatttttgagaggaatggaagattcgatataggccgatagttttttatattttctgggtcaaggtttggctttttcaagagagcctttattactgtcacttttagtgagtttggtacacatccggtggatagagagccgtttattatgttcaacataggagggccaagcacaggaagcagctctttcagtagtttagttggaatagggtccagtatgcagcttgaaggtttagaggccatgattattttcatcattgtgtcaagagatatagtactaaaacacttgagcgtctctcttgatcctaggtcctggcagagttgtgcagactcaggacaactgagctttgaaggaatacgcagatttaaggaggagtccgtaatttgctttctaatgatcataatcttttcctcaaagaagttcatgaatttatcactgctaaagtgaaagtcatcctctcttggggaatgctgctttttagttagctttgcgacagtatcaaaaaggaatttcggattgttcttattttcctcaattaagttagaaaaataggatgatcgagcagcagtaaggtctcttcggtactgcacagtactgtctttccaagctagtcggaagacttccagtttggtgtggcgccatttccgttccaattttctggaagcttgcttcagagctcgggtattttctgtgtaccagggagctagtttcttatgagaaatgtttttagtttttaggggtgccaCTGCAtttagggtattgcgcaaggttaaattgagttcctcagttaggtggttaactgatttttgtcctctggcgtccttgggtagacagagggaatctggaaggacatcaaggaatctttgtgttgtctgtgaatttatagcacgacttttgatgatccttggttggtgtctgagcagattatttgttgcaattgcaaacgtaataaaatggtggtccgatagtccaggattatgaggaaaaacattaagatccac

Function

NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1353201 True 1498 lncRNA 0.41 1 52400944 52402441

Neighbor

gene id symbol gene type direction distance location
LOC110485216 NA coding downstream 69368 52155640 ~ 52331576 (-)
LOC110538721 NA coding downstream 211241 52186557 ~ 52189703 (-)
LOC118938556 NA coding downstream 298987 52100885 ~ 52101957 (-)
LOC110486749 LOC106601716 coding downstream 793942 51592159 ~ 51607002 (-)
LOC110486760 LOC101074561 coding downstream 815353 51581861 ~ 51585591 (-)
LOC110486769 gtf2f1 coding upstream 12878 52415319 ~ 52430034 (-)
LOC110486776 LOC106606809 coding upstream 327937 52730378 ~ 52741555 (-)
LOC110485222 LOC106601739 coding upstream 691225 53093666 ~ 53107919 (-)
LOC110538731 LOC106592182 coding upstream 843953 53246394 ~ 53250376 (-)
LOC110539023 LOC106601728 coding upstream 955919 53358360 ~ 53417730 (-)
G1186535 NA non-coding downstream 1558 52324385 ~ 52399386 (-)
G1186536 NA non-coding downstream 7693 52388818 ~ 52393251 (-)
G1186547 NA non-coding downstream 30807 52347624 ~ 52370137 (-)
G1186481 NA non-coding downstream 186056 52206862 ~ 52214888 (-)
G1186563 NA non-coding upstream 95 52402536 ~ 52402988 (-)
G1186564 NA non-coding upstream 629 52403070 ~ 52404921 (-)
G1186566 NA non-coding upstream 5634 52408075 ~ 52408285 (-)
G1186567 NA non-coding upstream 7189 52409630 ~ 52410408 (-)
G1186568 NA non-coding upstream 8795 52411236 ~ 52411731 (-)
G1186381 NA other downstream 370284 51924963 ~ 52030660 (-)
G1186216 NA other downstream 389733 52010690 ~ 52011211 (-)
G1186154 NA other downstream 910703 51489777 ~ 51490241 (-)
G1186075 NA other downstream 1026990 51352309 ~ 51373954 (-)
G1186080 NA other downstream 1077013 51321800 ~ 51323931 (-)
G1186670 LOC100194703 other upstream 256890 52659331 ~ 52659809 (-)
mosmoa C20H16orf52 other upstream 1204583 53607021 ~ 53638313 (-)
si:ch73-374l24.1 LOC105026133 other upstream 1404203 53806640 ~ 54049592 (-)
G1188147 NA other upstream 2046442 54448883 ~ 54450020 (-)
G1188127 LOC106601757 other upstream 2063092 54409911 ~ 54470838 (-)

Expression


Co-expression Network