G1185940


Basic Information

Item Value
gene id G1185940
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52484479 ~ 52485136 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1352463
agagaattaaagaaagagagagagaattaaagaaagagagagagataattaaagaaagagagagagagaaataaaaaggagagagagagaattaaaggaagagagagagagaattaaagaaagagagggagagttaaagaaagagagagcgagaattaaataaaaagagagagagaattaaagaaagagagcgagagagagaattaaagaaagagagagagagttaaagaaagagagagaattaaagaaagagagagagagagatgactgtgattatgattgatCCCCTCTTTACACCTCTATTGTGTTAACAGCTGCTGTAGAGAGAGGTGATCATGAGGCAGTAGTCATTAtgtaatcagtgtgtgtgtgtgtgtgtgtgtgtttgttcagtaTGCATATTCTGACTTCCTACCTCTGAGAATTTGGGCAATTATAGCCAATTAGCGTAGGGTCCTCTGGCTGAGCTGAGCTCCCAATGCTAGTGCCTGACTGAAATAGTAAAAATGATAGAGTGATGCAACGCCAGGTGAATGTTGATCAGAGTGAGATCTGTATGACAGTACACCTCAGTACACCAGTACAGCCTATgactagactacactacacaggacgtacagtactgtagcatagACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1352463 True 636 lncRNA 0.39 2 52484479 52485136
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118938557 LOC106601687 coding upstream 39481 52443989 ~ 52444998 (+)
LOC110485217 fcl coding upstream 69903 52406177 ~ 52414576 (+)
LOC110486767 alkb7 coding upstream 94464 52374824 ~ 52390015 (+)
LOC110486765 LOC106606792 coding upstream 341749 52141273 ~ 52142730 (+)
LOC110486764 LOC106606789 coding upstream 344980 52121483 ~ 52139499 (+)
LOC110486772 NA coding downstream 127112 52612244 ~ 52616224 (+)
LOC118938093 NA coding downstream 200727 52685863 ~ 52688094 (+)
LOC110486774 sgsm3 coding downstream 220415 52705551 ~ 52731809 (+)
leg leg coding downstream 264712 52749848 ~ 52753917 (+)
LOC110539012 LOC106606743 coding downstream 422760 52907896 ~ 53046938 (+)
G1185887 NA non-coding upstream 80799 52403022 ~ 52403680 (+)
G1185900 NA non-coding upstream 125001 52350048 ~ 52359478 (+)
G1185898 NA non-coding upstream 137578 52346113 ~ 52346901 (+)
G1185841 NA non-coding upstream 226278 52257351 ~ 52258201 (+)
G1185788 NA non-coding upstream 237941 52244813 ~ 52246538 (+)
LOC110486773 LOC106601688 non-coding downstream 125888 52452794 ~ 52612169 (+)
G1185921 NA non-coding downstream 132558 52617694 ~ 52621551 (+)
G1185919 NA non-coding downstream 136546 52621682 ~ 52624208 (+)
G1186011 NA non-coding downstream 142235 52627371 ~ 52627914 (+)
G1185855 NA other upstream 128538 52274330 ~ 52355941 (+)
G1185815 NA other upstream 307974 52175266 ~ 52176505 (+)
LOC110485215 LOC106606764 other upstream 414864 52014531 ~ 52091683 (+)
LOC110538743 LOC106601732 other downstream 961287 53445335 ~ 53450473 (+)
G1187452 NA other downstream 1703431 54188567 ~ 54198015 (+)
G1187390 NA other downstream 1778930 54264066 ~ 54265028 (+)
axin2 LOC105026129 other downstream 1806449 54272638 ~ 54300365 (+)

Expression

G1185940 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.
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G1185940 Expression in each Bioproject

Bar chart with 8 bars.
G1185940 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
End of interactive chart.

Co-expression Network