G1186675 (leg)


Basic Information

Item Value
gene id G1186675
gene name leg
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52678774 ~ 52753876 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1353333
TGCACTTTTCTTAATCCACTTCTGGAATGATCTGGAATGATTGTTCCACATTAATGAAAGACACATTTATCTTCAATAAAACCATTTCAACACTTCCAAGCTTGTAATGTGCTGCTATTGTAAAATGTCTATTTTACTTGCAGGTTTCACTGTTAGTGGCTCCATCCATTGGTTAGGAATGGCAGCATTAAAACTAACTTAAAACTATGGTGAGTGAGTAAAAAAACAGAGAATAAGGCTTGTTGTGTGTGGACCTCTGGAAAGCCAATGAGTAGCCAGACAAGAAAGCTAAAGATCCAATTGAGGAGGATTCTTCTCCACTCCGACTGGTCTACTTGATCTCtctctctctccctctc
>TU1353328
TGCACTTTTCTTAATCCACTTCTGGAATGATCTGGAATGATTGTTCCACATTAATGAAAGACACATTTATCTTCAATAAAACCATTTCAACACTTCCAAGCTTGTAATGTGCTGCTATTGTAAAATGTCTATTTTACTTGCAGGTTTCACTGTTAGTGGCTCCATCCATTGGTTAGGAATGGCAGCATTAAAACTAACTTAAAACTATGGTGAGTGAGTAAAAAAACAGAGAATAAGGCTTGTTGTGTGTGGACCTCTGGAAAGCCAATGAGTAGCCAGACAAGAAAGCTAAAGATCCAATTGAGGAGGATTCTTCTCCACTCCGACTGGTCTACTTGATCTCGACGCCCTGGATCCTGACGTCGCCCTCGAAGTGCATGTATTTATACTTCTCGTCTCCTTGGCGATTGGGGAAGTGGATCTCAGAGCCGTCAGGAAAAGAAACTAGGAACTGCTCCTTGGTGAAGGTGATATTTATCTGAGACAGAGGTAATTACACATTTTTATCCAAAGAGGTGCTTAGGTATTTAGGATGCAGTGATTGCAAGTTATTGCCACCAGAGGTCCCCAGTAGAACTCCCTTATACATatgggaagagaggaggacattCACATCAGCATGGGTTAAATTGGAAACACACACAATGTAATTTCTCACCTTAAACTTCTCTCCCTGGTTGAAGGGGAATCCTCCCTCTCTGTGCTCCTCACACCACTTGCCTCCATGGTAGGAATTACACACCACGGCCCGGGTGTCTCCGTGGGCGTCGAAGCGAGGGTTCATGTGCAAGGCGAGGTCATCCTCGCTGTTGCCCACGTTGATGACAaaTGTGTTGCCTCAGAGTTGGGGATCCCTGTGATGGTCAGGGTCTGGCCCACCTTGAAGGACATGTTCTTTACCACAACaccctgtagggagagagagaagggagagaccgagagagagaaatacatcaATTGAAAAACATTAAAGGTGCAATTAGCTGATAGTTAATACGTAATTGGCCATAAGTTATGGCCTATAACTTCTGAAACAAAGATGGTTCTATCAAAGCATTGTTATAGTAAGTACCcagatgtcaattcaatgtaTAATCCAtattaaaattatgtggaacaacgctgattcaaccagtgtgtgttcAGTGGGTATAATGTAGATGGACGTGGCTCTGGTGTAGAGAGCTATAGAGTATGGCTACACTTTGCTAAACTCTTTCCTGTACTTTTATCCTAGACCCGTCAGTCTAACAAATACAACATCTGTCTCTAATTAAAGCTTTTCCATCTATGGAACGGCCCAACGATTTTTTATAAATCCCAGTCCTGGACAGCGTTCCCATTTTCCATGCAGTGATTTGGAATTTGGAGGGGGAGGCTAAATCTGTCCATAAATGATGGGGGAAGGAAGGCTGGGTTACACTCAGTAAGGCTTAAGTGAAGTCACATTTTCCGCAGGGTCCATATTATGGTGGGCAGCCAACATGGGACCAATGGAGGTTGGGCACGGCACAGAATCAAAGTACTGAGTGATCTTTACATGTGTCAGGGGAAATGGTGTTTAGATGTTTGTCTGCACATATACAGTCTTCTTAATGAGCTGCATATAGACCTCTTATTGTTGCCCTTCTTTCCATATGACATCTATTGGCCGTGGTGTGTAGTAAATGTTACCCATTTCTGTCACTTGGCAACTCCCTGTTCCTTCTCTGACAGAAGACAGTTAACCAGTTGAGCTAGAAACCAGGTCGATAAGATACTGTATAACCCTGGACAACAGCAGCTAATCAAACAGGAACCTCAAAGGGAAATTACATCAACATTTGTACTTCGGTTTTGTTTCTGTCAGCATAACAGTGGGCATTGGACAAGAACAACTGGCACACCTTACCCCTGAACATGTGTTTTAGCTTTCTTACTTGAATGCACTTCTTGTAAGTCACTGGGGGATAGGAGTGTGTACTTAATGCTTTCCGTGTAACTTTGAACGTACAGTAAGTACCAAATCACTGCTTACAAGACATACACAGTAGGACTCAGTATTAAGCCTTTAACAGTCCAGAGCCAGACACAAACCCATTGACATCCAATCCAGAAATACAACAACAGGATAATATAACATTAGAGCTCTATTAGTGTGGCACAGACTAGAAGACTACATTCtgacaagagagaaagagagagaatgtagaggagagagaaatgagagagagagagagaatgtagaggagagagaaataaagagcgAGAGAAtgtagaggagagatagaggagagagagataaagagagtagagcgagataaagagaggagagagaaataaagagaggagagagaaataaagagaggagagagaaataaagagaggagagagaaataaagagagaggagcagaaagggaggggtagagggtggaagagaccgacagagagagaaaagttaCAAAAATGAGAAATAGGGAAAGTGGTATaaagttcagagagagagagtgggagagaggggaggaaagagagagggggcgatAGTGAAGTATTTCATTATTTCCGTGTTAGTCCTCCCCCCTTAATGTAAACTGTGTGCAAAATCTATGGCGCTAGCTGGACTTGGctacatgcagcccagtgctACTTCAGACTGCAGTTCCCATCCCAGTGTGAGACATACCTCTCCACACTGTTTGAGAGACACAGGACAGCTGGGGCTGCAGCTGCAGGCAATGCAGAAATAGAATGGGTAGAATGGATATACATAGTTCGGAAATCCACATGATAACTCCTGGCTGTATACGTTACTTACTATCAAGCTTACCTGACTGACATTTACATTATAGTCATTAAAtagcagacgctcttacccaGAGCAACTGTACATATTTttcccctgtgggaatcgaaccaACAACATTGGAGTTGCAAGcacaatgctctaccaactgaactcaGGACATGACAGCCAATCTAACCCTTGTTAACCTGACGTTTACTGTAGGTATATCCTATAGCTCCGCTTGGGGAAGATCATACTGGCTCACTGGATATAACATCACTCTGCTACTCGATCTATTCTGACTTCTGTTTACGATAACTTGAATTAGTACATACGGATTAGATCATCATATCTAAAGATCACATGGAAGGTATTAAGAGTATAAGGAACTATTTAGAAGACACATGGATCTTATTAATCCCCAAAACAAACAtatcactgctgtctgtctgtctgtcttctacaTGCCTGCCCCACCAGGCCCTATGTCCACAACCTCTGTTATCAGTAGTAGTTTCAAAAAGTTTAAATAATTCATTGAGAGAATAAAATTAACTTTTGCAAACGATATAACTAAATGATATTGCAATGAGACACCCTTCTCATCTGTAGTCACTGCAGAAAAATAAAAAGTGCTATGTCATAAAACCTAGCCTGAACAAGACAGTCTACCATCTACCGTGCCAGAAGTCTGATTAGTCTTCTTAGACGCATCGACAATAAGGTTGACTATAAAAGGGCATTGTTAGAGAGGACATTGCTCTATTACATTGGGCTACAGAACATAGGCTATTAAAATCGGATAATTATTTTCCCAACAGCTGTTTTAAAGCGCCAACATGAACCGTTATGAACTTGCACTGCATGTAGGCTACTTTTCAGATAACAATCAAATGAACTAACATATCAGACATTGTAAACCAGTAAAATAAAACGTTGTACTTACACTCATCTTGACAGTACAAACCGCAAATGTTCACAGCTGAAGAATGCTTAGCTGGCTTCAGACTGCAGTAGAACCAAGCAGGCGAGCTTATATGGTCAAGTGCGCTAGCCAAATGTGAGTGACGCTATGATAAACCAATAGGAGTATAGGCGCTCAAAAAACGGACCAATCACAGATAAGTTTTAAAAAGCGATATAAACTATTTAGCACGCAAGAGAGGACGAAAATAAAACGTCCATAGTTGAAGGTGATTGAG
>TU1353329
TGCACTTTTCTTAATCCACTTCTGGAATGATCTGGAATGATTGTTCCACATTAATGAAAGACACATTTATCTTCAATAAAACCATTTCAACACTTCCAAGCTTGTAATGTGCTGCTATTGTAAAATGTCTATTTTACTTGCAGGTTTCACTGTTAGTGGCTCCATCCATTGGTTAGGAATGGCAGCATTAAAACTAACTTAAAACTATGGTGAGTGAGTAAAAAAACAGAGAATAAGGCTTGTTGTGTGTGGACCTCTGGAAAGCCAATGAGTAGCCAGACAAGAAAGCTAAAGATCCAATTGAGGAGGATTCTTCTCCACTCCGACTGGTCTACTTGATCTCGACGCCCTGGATCCTGACGTCGCCCTCGAAGTGCATGTATTTATACTTCTCGTCTCCTTGGCGATTGGGGAAGTGGATCTCAGAGCCGTCAGGAAAAGAAACTAGGAACTGCTCCTTGGTGAAGGTGATATTTATCTTAAACTTCTCTCCCTGGTTGAAGGGGAATCCTCCCTCTCTGTGCTCCTCACACCACTTGCCTCCATGGTAGGAATTACACACCACGGCCCGGGTGTCTCCGTGGGCGTCGAAGCGAGGGTTCATGTGCAAGGCGAGGTCATCCTCGCTGTTGCCCACGTTGATGACAaaaTGTGTTGCCTCAGAGTTGGGGATCCCTGTGATGGTCAGGGTCTGGCCCACCTTGAAGGACATGTTCTTTACCACAACaccACTCATCTTGACAGTACAAACCGCAAATGTTCACAGCTGAAGAATGCTTAGCTGGCTTCAGACTGCAGTAGAACCAAGCAGGCGAGCTTATATGGTCAAGTGCGCTAGCCAAATGTGAGTGACGCTATGATAAACCAATAGGAGTATAGGCGCTCAAAAAACGGACCAATCACAGATAAGTTTTAAAAAGCGATATAAACTATTTAGCACGCAAGAGAGGACGAAAATAAAACGTCCATAGTTGAAGGTGATTGAG

Function

symbol description
leg Acts upstream of or within regulation of heart contraction.

NR:

description
Beta-galactoside-binding lectin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1353333 False 359 lncRNA 0.39 2 52678774 52753876
TU1353328 False 3967 lncRNA 0.42 2 52749651 52753876
TU1353329 True 986 lncRNA 0.45 4 52749651 52753876

Neighbor

gene id symbol gene type direction distance location
LOC110486769 gtf2f1 coding downstream 248740 52415319 ~ 52430034 (-)
LOC110485216 NA coding downstream 347198 52155640 ~ 52331576 (-)
LOC110538721 NA coding downstream 489071 52186557 ~ 52189703 (-)
LOC118938556 NA coding downstream 576817 52100885 ~ 52101957 (-)
LOC110486749 LOC106601716 coding downstream 1071772 51592159 ~ 51607002 (-)
LOC110485222 LOC106601739 coding upstream 339790 53093666 ~ 53107919 (-)
LOC110538731 LOC106592182 coding upstream 492518 53246394 ~ 53250376 (-)
LOC110539023 LOC106601728 coding upstream 604484 53358360 ~ 53417730 (-)
LOC118938325 LOC106606746 coding upstream 676156 53430032 ~ 53440075 (-)
LOC110538745 LOC106606750 coding upstream 696678 53450554 ~ 53456191 (-)
G1186669 NA non-coding downstream 20484 52658015 ~ 52658290 (-)
G1186664 NA non-coding downstream 29360 52649146 ~ 52649414 (-)
G1186661 NA non-coding downstream 34177 52644374 ~ 52644597 (-)
G1186658 NA non-coding downstream 43185 52635287 ~ 52635589 (-)
G1186656 NA non-coding downstream 47141 52631415 ~ 52631633 (-)
G1186736 NA non-coding upstream 17939 52771815 ~ 52772021 (-)
G1186820 NA non-coding upstream 22871 52776747 ~ 52777022 (-)
G1186826 NA non-coding upstream 39724 52793600 ~ 52866860 (-)
G1186856 NA non-coding upstream 168789 52922665 ~ 52924164 (-)
G1186957 NA non-coding upstream 222173 52976049 ~ 52976614 (-)
G1186670 LOC100194703 other downstream 18965 52659331 ~ 52659809 (-)
G1186381 NA other downstream 648114 51924963 ~ 52030660 (-)
G1186216 NA other downstream 667563 52010690 ~ 52011211 (-)
G1186154 NA other downstream 1188533 51489777 ~ 51490241 (-)
G1186075 NA other downstream 1304820 51352309 ~ 51373954 (-)
mosmoa C20H16orf52 other upstream 853148 53607021 ~ 53638313 (-)
si:ch73-374l24.1 LOC105026133 other upstream 1052768 53806640 ~ 54049592 (-)
G1188147 NA other upstream 1695007 54448883 ~ 54450020 (-)
G1188127 LOC106601757 other upstream 1711657 54409911 ~ 54470838 (-)
G1188186 LOC106588841 other upstream 1845525 54599401 ~ 54600449 (-)

Expression


Co-expression Network