G1186962 (LOC106606743)


Basic Information

Item Value
gene id G1186962
gene name LOC106606743
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52983084 ~ 52983640 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1353661
TGTCATCGTCCAGGTCCTCTCTGTCCTTGCGTGTGTTGACCTGAGGGAACACCTCTGTCAGTAgctgtggatgtggatgtggatgtggatgtggcgGTAGCTGAAGTTGAAGCTGGAGCTGGGCTGATGGGGCCTTCCCATTGCAGTCCTGGTGCTCCCCCCCAGTCCCTCCACCAACCAACCCACTGGAGAAGCTCTTCTTCCTGGGGTAAGGCAGCATTGATGCCAGGGGGGTCCCCGGGACCTGGAGGAGCTCCGGCAGCTCCAAGGACAGCGCCCGGCGGTCCCGCCGCGGGACAAAGTTTAGGgccaggaggggaggagggtgggtgaGGTGCGGAGGAGggtgagggggggagaggagggactcCTGCTCGGCCGGGTGGGTGGCGTGGGGGCTGCGGGAGCGCAGGCTACCCCCTCCTCCTACCCCCAATCCCAGGCCCAAGGCTTGGGAGGGGCGACCCAGGCTGTTCCAGCTGGACCGCCGGCCCCACATTGCCTGGGTCTGGGAGGCAGGACGGCCCCAGTTGTGGTACAGGGAGCTGCTCCCCCga

Function

NR:

description
voltage-dependent T-type calcium channel subunit alpha-1I-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1353661 True 557 lncRNA 0.66 1 52983084 52983640

Neighbor

gene id symbol gene type direction distance location
LOC110486776 LOC106606809 coding downstream 241529 52730378 ~ 52741555 (-)
LOC110486769 gtf2f1 coding downstream 553050 52415319 ~ 52430034 (-)
LOC110485216 NA coding downstream 651508 52155640 ~ 52331576 (-)
LOC110538721 NA coding downstream 793381 52186557 ~ 52189703 (-)
LOC118938556 NA coding downstream 881127 52100885 ~ 52101957 (-)
LOC110485222 LOC106601739 coding upstream 110026 53093666 ~ 53107919 (-)
LOC110538731 LOC106592182 coding upstream 262754 53246394 ~ 53250376 (-)
LOC110539023 LOC106601728 coding upstream 374720 53358360 ~ 53417730 (-)
LOC118938325 LOC106606746 coding upstream 446392 53430032 ~ 53440075 (-)
LOC110538745 LOC106606750 coding upstream 466914 53450554 ~ 53456191 (-)
G1186961 NA non-coding downstream 840 52981609 ~ 52982244 (-)
G1186959 NA non-coding downstream 3865 52978989 ~ 52979219 (-)
G1186958 NA non-coding downstream 5586 52976725 ~ 52977498 (-)
G1186957 NA non-coding downstream 6470 52976049 ~ 52976614 (-)
G1186856 NA non-coding downstream 58920 52922665 ~ 52924164 (-)
G1186964 NA non-coding upstream 4469 52988109 ~ 52988672 (-)
G1186965 NA non-coding upstream 8827 52992467 ~ 52992666 (-)
G1186966 NA non-coding upstream 10986 52994626 ~ 52995542 (-)
G1186969 NA non-coding upstream 18209 53001849 ~ 53002099 (-)
G1186970 NA non-coding upstream 19268 53002908 ~ 53003129 (-)
G1186670 LOC100194703 other downstream 323275 52659331 ~ 52659809 (-)
G1186381 NA other downstream 952424 51924963 ~ 52030660 (-)
G1186216 NA other downstream 971873 52010690 ~ 52011211 (-)
G1186154 NA other downstream 1492843 51489777 ~ 51490241 (-)
G1186075 NA other downstream 1609130 51352309 ~ 51373954 (-)
mosmoa C20H16orf52 other upstream 623384 53607021 ~ 53638313 (-)
si:ch73-374l24.1 LOC105026133 other upstream 823004 53806640 ~ 54049592 (-)
G1188147 NA other upstream 1465243 54448883 ~ 54450020 (-)
G1188127 LOC106601757 other upstream 1481893 54409911 ~ 54470838 (-)
G1188186 LOC106588841 other upstream 1615761 54599401 ~ 54600449 (-)

Expression


Co-expression Network